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  3. RAFL06-85-A04

RAFL06-85-A04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07736)

full reading [+] show sequence

Nucleotide sequence: RAFL06-85-A04 - full reading 
GATTCCTTCT TTTGTTTTAA ACTTCTTTTT GATTCTTTCT ATATATACAA 
ATACAAAATC TCCTCTTCTT CTTGAAAAAG CTCTTTACGT TTCTCTCTCT 
CTCTCTAATT GCCTGCTATG ATGCAAGAAT TAGGCTTACA ACGTTTCTCA 
AACGACGTCG TTCGCTTAGA CCTCACTCCT CCTTCTCAAA CCTCATCTAC 
TTCTCTTTCC ATCGACGAAG AGGAATCAAC GGAAGCCAAG ATCCGACGGC 
TGATATCGGA GCATCCTGTG ATCATCTTCA GTAGATCTTC ATGTTGCATG 
TGCCACGTCA TGAAGAGACT CTTAGCAACG ATCGGCGTAA TCCCCACCGT 
CATCGAGCTC GATGATCACG AGGTTTCCTC TCTTCCCACG GCTCTACAAG 
ATGAATATTC CGGTGGCGTC TCCGTCGTTG GTCCTCCGCC GGCGGTTTTC 
ATTGGCCGTG AGTGCGTCGG AGGTCTTGAG TCCCTTGTCG CTCTTCACTT 
AAGTGGTCAA CTTGTTCCTA AGCTTGTCCA AGTTGGAGCT CTTTGGGTAT 
GATTGTAATT TTCATCGTCT TCTTACTTGT GTTAAAATCA ATAGGCTTTT 
GCAGTATCAA AAGAAAACAA AAATTAGGGT TTCACTTCAA TTGGTCATGA 
AAGCCAAATT CTGATTATCA TCAGATGATC ATAATTAAAC ACCCATGTAG 
AAAATGAATT ATGAATAATT AAAGATGTGT AATTAGTAAA TTTTATACGA 
AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT4G33040.1 [+] show detail - Thioredoxin superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Thioredoxin-like fold 1.2e-18
HMMTigr Glutaredoxin-like, plant II 9.8e-44
Gene3D Thioredoxin fold 4.8e-19
HMMPfam Glutaredoxin 6e-08
HMMPanther GLUTAREDOXIN, GRX 1.9e-64
HMMPanther GLUTAREDOXIN 1.9e-64
ProfileScan Glutaredoxin 19.908

See the detailed result >

AT4G33040.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Computational Description
Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT5G11930.1); Has 1149 Blast hits to 1147 proteins in 175 species: Archae - 0; Bacteria - 20; Metazoa - 257; Fungi - 124; Plants - 712; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-85-A04 introduced

  • F00149 - Specific phenotypes were NOT observed.
  • F07317 - Specific phenotypes were NOT observed.
  • F08202 - Specific phenotypes were NOT observed.
  • F10823 - Specific phenotypes were NOT observed.
  • F11749 - Specific phenotypes were NOT observed.
  • F17829 - Specific phenotypes were NOT observed.
  • F18617 - Specific phenotypes were NOT observed.
  • F20017 - rosette leaf::increased size / rosette leaf::increased length / stem::increased thickness / whole plant::increased height
  • F20414 - Specific phenotypes were NOT observed.
  • F23138 - Specific phenotypes were NOT observed.
  • F23502 - Specific phenotypes were NOT observed.
  • F29121 - Specific phenotypes were NOT observed.
  • F29225 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

16 mutant lines found