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  3. RAFL06-85-A11

RAFL06-85-A11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07737)

full reading [+] show sequence

Nucleotide sequence: RAFL06-85-A11 - full reading 
CTTTGACGCG TAATTGTGAT CCTATATATA CATAACACTA CCGCAACTTC 
AGCAACCTCT AAATCATTCG TCTCCTAAAA TTTTCCAATC TCAAAATCCC 
AAAAGAACAA AATCGAATGG TGTCAACAAA TCCCCCTGTT CTTCCAATTT 
CCACCACCGC AACAGACACC ACCAATCAGC CTCCGATTGT AACCGCTGTG 
GTGGAATCGC AACCTCCAGT CGTCCGTGCA TTTGTCAACG GTGTGACCGA 
GACGGTCTGT GGTGGTCTAT CTCGTAGCCG TCCGTGGTCA GAGCTCCTCG 
ATCGATCCGC TTTCACAAAG CCTGACTCTC TCTCCGAGGC CGGGACGCGA 
TTCCGGAAAA ATTCCTCTTA TTTCAGGGTG AATTACGTTT GCATTGTCGC 
TCTGATCCTT GGTTTCTCTC TTCTCGCCCA CCCATTCTCT CATCCTCCTC 
CTATGTCTCG CCGCTTCCTG GCTCTTCCTC TACCTCTTCC GTCCATCAGA 
TCGTCCTCTT ATCCTCTTCG GCCGATCTTT CTCCGAATAC GAAACTCTCG 
GTGGCCTAAT CCTCTCCACG ATCGCAGTGA TCTTCTTCAC AAGCGTCGGA 
TCTGTATTGA TATCCGCTCT CATGATCGGA ATAGCAACAA TCTGTGTCCA 
TGGCGCCTTT AGAGCTCCCG ATGATCTCTT CCTCGACGAA CAAGATCATG 
CCGCCTCCGG ATTCCTCTCA TTCATCGGTG TTCCCGCGAT CCCCTCTGTA 
GCACCCTCTG CCTCCTCAGC GGCTTCCCCC GTGTAAATTA TAGTTCTCAG 
AATCTGGCGT GTTTAGAGAT TTGAAGGTGG AGATTGTTGC AATGT

Gene models with high sequence identity

  1. AT5G01640.1 [+] show detail - prenylated RAB acceptor 1.B5
    E-value: 0; Score: 99.76

 

InterPro Scan Digest

Program Description E-value
HMMPfam Prenylated rab acceptor PRA1 1.3e-26
HMMPfam Prenylated rab acceptor PRA1 2.4e-20
HMMPanther PRENYLATED RAB ACCEPTOR 1-RELATED 2.5e-16
HMMPanther PRENYLATED RAB ACCEPTOR 1-RELATED 8.8e-28

See the detailed result >

AT5G01640.1

Model type
Protein coding
Short Description
prenylated RAB acceptor 1.B5
Computational Description
prenylated RAB acceptor 1.B5 (PRA1.B5); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B4 (TAIR:AT2G38360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-85-A11 introduced

  • F01934 - Specific phenotypes were NOT observed.
  • F20148 - Specific phenotypes were NOT observed.
  • F26439 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found