1. Home
  2. Full-length cDNAs
  3. RAFL06-86-A08

RAFL06-86-A08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03884)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-A08 - full reading 
AGAAGAAATC TTTCAGATTT GCGCATATCG ACAATTTTCC GAGCGGCCAG 
TTTACGTATT TTGTTTGTAG TTAACGTGTT TCAAGGACTT TGACAATGGC 
TGAGGAAGCG CATAAGGTAA CATTGAATGT CTATGATTTA AGCCAAGGCT 
TGGCACGCCA GCTCTCACAA TCACTCCTGG GAAAGGTTAT TGAAGGTGTA 
TGGCATACAG GAATAGTTGT CTATGGGAAT GAGTACTTTT TTGGAGGAGG 
GATACAACAT TTACCAGTTG GAAGAACTCC ATATGGAACA CCAATTCGAA 
CGATAGAGTT GGGTCTATCA CATGTGCCTA AAGATGTATT CGAGATGTAC 
TTGGAAGAAA TCAGTCCTCG TTACACTGCT GAATCCTACA ATTTACTTAC 
TCACAACTGC AACAACTTCA GCAACGAGGT CGCTCAGTTT TTGGTGGGTA 
AAGGGATTCC TGACTACATT CTCCAGCTTC CTAATGATGT TCTAAACAGT 
CCCATGGGTG GTCTTATAAT GCCTATGTTG CAAGGCCTCG AAACAACTCT 
AAAGGCTGGT GCTGTTCCTC AAGTTCCACA GTTTAGGCCA CAGCCACAAC 
CTTTTGGAGC TTTTAGTAAA GATGATGGCC CACAAATTGT GATAGCTCCT 
AAGCTCGAGG CAGCAGAAAC CTCAACTGCA ACTGAGAAAG TGCCACCTGT 
TATTCAACCA TCAGCTAGTA AAGAGAAGGT CAAGGACGAC CCGTTGGGTG 
ATGCTAGGGC CAAGATTCAG GAAGAGATTA CAAGCGAATT TGCAGCTCTA 
ATGGCACAAG GCACATTACG AGCAAGTGAA GCAGCTGCTA TGGCGACAAA 
AAGAGTCATG CAAAAGTACG GACATCTCAA TGTAAACGCT TAGTGCAATA 
ACAGAGAGAT GAAACATTTT ATTAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT3G07090.1 [+] show detail - PPPDE putative thiol peptidase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther UNCHARACTERIZED 2e-53
HMMPfam Protein of unknown function DUF862, eukaryotic 3.1e-42

See the detailed result >

AT3G07090.1

Model type
Protein coding
Short Description
PPPDE putative thiol peptidase family protein
Computational Description
PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 872 Blast hits to 872 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 119; Plants - 332; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-A08 introduced

  • F03150 - Specific phenotypes were NOT observed.
  • F06419 - Specific phenotypes were NOT observed.
  • F09122 - Specific phenotypes were NOT observed.
  • F12909 - rosette leaf::dark green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::decreased width / cauline leaf::present in fewer numbers in organism / stem::present in fewer numbers in organism
  • F19304 - Specific phenotypes were NOT observed.
  • F19925 - Specific phenotypes were NOT observed.
  • F22949 - rosette leaf::increased size / rosette leaf::increased length / cauline leaf::increased size / stem::increased thickness / stem::abnormal / cauline leaf::dark green / stem internode::decreased length
  • F29518 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found