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RAFL06-86-D10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03890)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-D10 - full reading 
AACATAAGCC ATGGATTCTT TAAGAGGCCA AGGTGGGATT CAGATGCTTT 
TAACTGCTGA ACAAGAAGCC GGACGGATTG TTTCAGCTGC GAGGACCGCA 
AAACTAGCAA GAATGAAGCA AGCGAAAGAT GAGGCTGAGA AGGAGATGGA 
AGAATACAGA TCCCGATTAG AAGAAGAGTA TCAAACTCAA GTTTCTGGGA 
CGGATCAAGA AGCAGATGCA AAACGTTTAG ATGATGAGAC AGATGTCAGG 
ATTACGAACC TTAAGGAATC TAGTTCAAAG GTCTCCAAGG ATATTGTCAA 
GATGCTCATC AAGTATGTCA CCACTACTGC AGCATGATTC TCACTACACC 
GCCCCCATCG TATCTTATTC TCCTGATAAT AAAACTGTTA TGATTCTTCA 
AAAAAAATAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT4G25950.1 [+] show detail - vacuolar ATP synthase G3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam Vacuolar (H+)-ATPase G subunit 2.1e-29
HMMTigr Vacuolar (H+)-ATPase G subunit 4.8e-10
HMMPanther VACUOLAR ATP SYNTHASE SUBUNIT G PLANT 4.2e-57
HMMPanther Vacuolar (H+)-ATPase G subunit 4.2e-57

See the detailed result >

AT4G25950.1

Model type
Protein coding
Short Description
vacuolar ATP synthase G3
Curator Summary
V-ATPase G-subunit like protein
Computational Description
vacuolar ATP synthase G3 (VATG3); FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; INVOLVED IN: proton transport; LOCATED IN: vacuole; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Vacuolar (H+)-ATPase G subunit (InterPro:IPR005124); BEST Arabidopsis thaliana protein match is: vacuolar membrane ATPase 10 (TAIR:AT3G01390.2); Has 543 Blast hits to 543 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 119; Plants - 123; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-D10 introduced

  • F04135 - Specific phenotypes were NOT observed.
  • F05209 - Specific phenotypes were NOT observed.
  • F06717 - Specific phenotypes were NOT observed.
  • F08021 - cauline leaf::abnormal
  • F09945 - Specific phenotypes were NOT observed.
  • F13714 - Specific phenotypes were NOT observed.
  • F15208 - rosette leaf::increased size / rosette leaf::increased length / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / cauline leaf::decreased width / cauline leaf::epinastic / stem::present in fewer numbers in organism
  • F18539 - seed::increased size / seed::increased length
  • F18918 - Specific phenotypes were NOT observed.
  • F20139 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found