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  3. RAFL06-86-D19

RAFL06-86-D19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07738)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-D19 - full reading 
AACTTATGTT TCTATGGTTT CTTGCGTATC ACGGTTGAAT TTTATAGGTA 
CAACATTGAA TTATTTCTTG GACAACAAGA TAAACAAAGC CGAGATCCTC 
TTCCCTGGCG TAGGTTGCTT CTTGATCGCT GTTTTCCTAG GCGCTGCGGT 
TCATGCTTCT AATGCAGCTG ATGTCAAAGA GAAACTCAAG TCTTTACCTA 
GCGAGTATAA AGCTGAGACA AACTAAGATG TTGCTCTTTC TTTTGCCTTT 
GTTCCATGTT TTAAAAATGT TTTAACAAAA CTCTGATCTT TTTCAGAGAT 
TTATATTCTT CTATTGAAAA TGGTGAAGAC AAGCCTGAAA TAGGTAAAAC 
CATGAACAGA GAAAACTGAT GTCGAATCTC AAGAGAAACT CGCGGAAAAG 
GCGAAAGCAG GGACGGCAGG ATTCTATGTA GAGCTAGAGA ACAAAAGAGC 
AATCAAGGTT CAATTACAAT GACCAAGAGA AAAACCTTTA GCAAGATTAC 
GTAGCAAAGG AGAGTATACA ACTACTCTCG GTGCTTAAAA CCTCATCAAT 
GCGCAGGTCT TTGGAAAAAG CATAATGATC GGACTATTCA TAACGCTGTT 
CGCGGGAATC AGCCTTTCTC TATTCTCTCC TGCATTCAAC TTGGCAACAA 
ACGATCAATG GAGTAC

Gene models with high sequence identity

  1. AT2G03520.1 [+] show detail - ureide permease 4
    E-value: 2e-84; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G03520.1

Model type
Protein coding
Short Description
ureide permease 4
Curator Summary
Encodes AtUPS4, a member of the Arabidopsis ureide permease family.
Computational Description
ureide permease 4 (UPS4); LOCATED IN: chloroplast; EXPRESSED IN: stigma, seedling, fruit, filament, seed; BEST Arabidopsis thaliana protein match is: ureide permease 1 (TAIR:AT2G03590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-D19 introduced

  • F05341 - Specific phenotypes were NOT observed.
  • F08330 - seed::increased size / seed::increased length
  • F11647 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found