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  3. RAFL06-86-E24

RAFL06-86-E24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17263)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-E24 - full reading 
CCCGGAAGCA GAGGATAGAC AGAGAGAAAA GGGAAAATTA CCAGACAAGA 
GTTCTTCTTT CTTCTCTCTG CCTGCTTCTT TTTCCTCTCT TTTCTCTCTC 
TCTCTCTTTC TTTGTGAAAA TCTAGAAGAA GAGAAAGCTA CAAAAATCTC 
AACATCGAGG TAAGAGTTTT GGCTACAGAG CAACCATGCT AACTTGCGCC 
TTCTCCCAAA ATCTTATCCA CTAATCTCGG TAAGGAAAGT GATGTTGGCA 
AAATGGTGAA GAAAGGAAGT TGGTTTTCTG CTATCAAAAG GGTTTTTACT 
CCACATTCCA AAGAGAAGCT AGCCAATGAA CCAGAGAGAA AGAGTGGCAA 
AGAAAAGAAG AAGAAAGGTT TTGGGAAGCT AAGGCATGGC GAGACCAATT 
CATTTCTTCC CATCTTCAGA GAGCCTAGTA GTATCGAAAA GATCTTGGGC 
GAGGCTGAGA GAGATCACAA TCTTGTCTTC AGGCCTCCTA CTCCTGATCG 
ACCAAATCCA TATTCAGCCT CTCCTCCTCC GAGGCCTGCT TCTCCTCGGG 
TTGCTTCCCC AAGACCAACT TCTCCAAGAG TTGCCTCACC ACGAGTCCCT 
TCTCCAAGAG CTGAAGTTCC AAGAACCCTT TCACCAAAGC CTCCTTCTCC 
AAGAGCTGAA GTTCCAAGAT CCCTTTCACC AAAGCCTCCT TCTCCAAGAG 
CTGACCTTCC AAGATCACTT TCGCCAAAGC CCTTTGATCG ATCGAAGCCA 
TCATCAGCCT CTGCTAATGC CCCTCCTACT CTTAGGCCTG CTTCTACTCG 
AGTTCCTTCT CAGAGAATTA CACCTCACAG TGTTCCTTCT CCAAGACCAA 
GTTCACCAAG AGGTGCCTCC CCACAAGCCA TCTCTTCAAA GCCGCCTTCT 
CCAAGAGCAG AGCCACCAAC ATTGGACACT CCAAGACCTC CCTCTCCAAG 
AGCTGCTTCT CTAAGAGCAG ACCCACCAAG ATTGGATGCT GCACGACCCA 
CCACGCCTAG GCCTCCTTCT CCACTAGCAG ACGCACCAAG ATTGGATGCT 
CCACGACCCA CTACGCCTAA GCCGCCTTCT CCAAGATCAG ACCCGCCAAG 
ATTGGATGCT CCAAGACCCA CTACGCCTAA GCCCCCTTCT CCAAGATCGG 
TTTCTCCTAG GGCTGTGCAG CGGCGGGAGA TTGTTTATAG ACCAGAGCCA 
ACGCTTCCGG TCCAACATGC TTCTGCAACA AAGATTCAAG GAGCTTTCAG 
AGGTTACATG GCAAGGAAGA GTTTCAGAGC TCTCAAAGGT CTAGTCAGAC 
TTCAAGGTGT GGTGAGAGGA TACAGCGTGA AGCGGCAGAC GATAAATGCA 
ATGAAGTACA TGCAGCAAGT GGTCCGTGTT CAATCCCAAA TCCAGTCACG 
TCGCATCAAA ATGTTGGAAA ACCAAGCCCA GGTAGAGAAA GATGAAGCCA 
AATGGGCTGC GTCTGAAGCT GGTAATGATA ATTGGGATGA CAGTGTGCTG 
ACAAAAGAGG AAAGGGATTC AAGATCACAA AGAAAGACTG ACGCAATCAT 
CAAGAGAGAA AGATCCATGG CCTATGCATA TTCTCGCAAG TTGTGGAAGA 
ACAGTCCTAA GTCTACTCAG GACAATCGTT CTTTCCCTCA ATGGTGGAAC 
TGGGTGGACC GGCAGAATCC TCTTGCTAGT CCTGCACCGA GCTATAGCCA 
ACCACAAAGA GATTTCAGGC TAACACCATC AAGACTGTGC CCAAGTCCTC 
TGTCTCAGTC AAGCAAACAA CACCATATCA GGCTTGACAA CCACTTTGAC 
ACTTCAACAC CCAGATCGTC AAGATCCACT TTTCACACTC CCTCCAGACC 
CATCCACACA GGGACATCAA GATACTCAAG AGGAAGACTA AGAGGTCAAG 
ATTCTCCTTT CAAGGATGAT GATAGCCTCA CAAGCTGCCC TCCATTCCCT 
AGCTACATGG CTCCAACAGT CTCTGCCAAA GCAAAAGTTA GACCAAACAG 
CAATCCAAAG GAGAGAGTGA TGGGTACACC AGTCAGCGAG AAGAGGAGAA 
TGTCGTATCC CCCCACGCAA GATACGTTTA GATGGAACAA AGGGTCATTG 
GTCATGAGCA ACAGCAGCAG CCACAGAGGT CCTGGTTCAC CTGGAGGTGT 
GGTTCTTGAG AAGCACAAGA CACTTAAATC AGTAGGAAAT TTGAGCATTG 
GTTCCACTGC CTCCATGGCA ACAACAGTTG GGAGAAAGGA ATTTAACAGA 
TTTGTGTGAT TTCTTTTGAT TTGAACATTT TTCTTTGGGT TGTGTTGATT 
TTGAGTGTTG TAACATAATA AAAGGTAAAA CAGAAAAACA AAAAAAACCG 
GAGGATTTGG TTTGAAGTAG AACTCTTAGA AATGATATGA GCATTAGACT 
TGGTAATACT AATGAAAAAA GTTGACACTT GAAGCAAATT CACAAGGGTA 
AAATGTATCT TACGGTTTTT AATGAAAGCT AAAGAGACTG TAGGGCTTCA 
ACAAAAAAA

Gene models with high sequence identity

  1. AT2G43680.3 [+] show detail - IQ-domain 14
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart IQ calmodulin-binding region 8.2e-05
Coil coiled-coil 0
HMMPfam IQ calmodulin-binding region 2.9e-05
ProfileScan IQ calmodulin-binding region 10.658
ProfileScan IQ calmodulin-binding region 6.888

See the detailed result >

AT2G43680.3

Model type
Protein coding
Short Description
IQ-domain 14
Computational Description
IQ-domain 14 (IQD14); FUNCTIONS IN: calmodulin binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 13 (TAIR:AT3G59690.1); Has 118926 Blast hits to 59821 proteins in 2152 species: Archae - 194; Bacteria - 23690; Metazoa - 41386; Fungi - 20516; Plants - 13347; Viruses - 3789; Other Eukaryotes - 16004 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-E24 introduced

  • F07833 - Specific phenotypes were NOT observed.
  • F10706 - seed::increased size / seed::increased length
  • F22140 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found