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  3. RAFL06-86-F19

RAFL06-86-F19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07740)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-F19 - full reading 
TGACCGCAAC AAAGAAAAAA CAAAAGTTTG AGAAAAATGG TGTGTTCGTT 
GTGTAACCAA TGATTGGGTT TTAGCTTACT ACTTCGAGAG ATTATAAGAA 
AGAAAGAGTG AAGATACATT ATAGAAAGAA GAGAAGCAGA AACCAAAAAA 
AGAAACCATG AAGTCTTTTT GTGATAATGA TGATAATAAT CATAGCAACA 
CGACTAATTT GTTAGGGTTC TCATTGTCTT CAAATATGAT GAAAATGGGA 
GGTAGAGGAG GTAGAGAAGC TATTTACTCA TCTTCAACTT CTTCAGCTGC 
AACTTCTTCT TCTTCTGTTC CACCTCAACT TGTTGTTGGT GACAACACTA 
GCAACTTTGG TGTTTGCTAT GGATCTAACC CAAATGGAGG AATCTATTCT 
CACATGTCTG TGATGCCACT CAGATCTGAT GGTTCTCTTT GCTTAATGGA 
AGCTCTCAAC AGATCTTCTC ACTCGAATCA CCATCAAGAT TCATCTCCAA 
AGGTGGAGGA TTTCTTTGGG ACCCATCACA ACAACACAAG TCACAAAGAA 
GCCATGGATC TTAGCTTAGA TAGTTTATTC TACAACACCA CTCATGAGCC 
CAACACGACT ACAAACTTTC AAGAGTTCTT TAGCTTCCCT CAAACCAGAA 
ACCATGAGGA AGAAACTAGA AATTACGGGA ATGACCCTAG TTTGACACAT 
GGAGGGTCTT TTAATGTAGG GGTATATGGG GAATTTCAAC AGTCACTGAG 
CTTATCCATG AGCCCTGGGT CACAATCTAG CTGCATCACT GGCTCTCACC 
ACCACCAACA AAACCAAAAC CAAAACCACC AAAGCCAAAA CCACCAGCAG 
ATCTCTGAAG CTCTTGTGGA GACAAGCGTT GGGTTTGAGA CGACGACAAT 
GGCGGCTGCG AAGAAGAAGA GGGGACAAGA GGATGTTGTA GTTGTTGGTC 
AGAAACAGAT TGTTCATAGA AAATCTATCG ATACTTTTGG ACAACGAACT 
TCTCAATACC GAGGCGTTAC AAGACATAGA TGGACTGGTA GATATGAAGC 
TCATCTATGG GACAATAGTT TCAAGAAGGA AGGTCACAGT AGAAAAGGAA 
GACAAGTTTA TCTGGGAGGT TATGATATGG AGGAGAAAGC TGCTCGAGCA 
TATGATCTTG CTGCACTCAA GTACTGGGGT CCCTCTACTC ACACCAATTT 
CTCTGCGGAG AATTATCAGA AAGAGATTGA AGACATGAAG AACATGACTA 
GACAAGAATA TGTTGCACAT TTGAGAAGGA AGAGCAGTGG TTTCTCTAGG 
GGTGCTTCCA TCTATAGAGG AGTCACAAGA CATCACCAGC ATGGAAGGTG 
GCAAGCACGG ATTGGTAGAG TCGCTGGAAA CAAAGATCTC TACCTTGGAA 
CTTTTGGAAC CCAAGAAGAA GCTGCAGAAG CTTACGATGT AGCAGCAATT 
AAGTTCCGTG GCACAAATGC TGTGACTAAC TTTGATATCA CGAGGTACGA 
TGTTGATCGT ATCATGTCTA GTAACACACT CTTGTCTGGA GAGTTAGCGC 
GAAGGAACAA CAACAGCATT GTCGTCAGGA ATACTGAAGA CCAAACCGCT 
CTAAATGCTG TTGTGGAAGG TGGTTCCAAC AAAGAAGTCA GTACTCCCGA 
GAGACTCTTG AGTTTTCCGG CGATTTTCGC GTTGCCTCAA GTTAATCAAA 
AGATGTTCGG ATCAAATATG GGCGGAAATA TGAGTCCTTG GACATCAAAC 
CCTAATGCTG AGCTTAAGAC CGTCGCTCTT ACTTTGCCTC AGATGCCGGT 
TTTCGCTGCT TGGGCTGATT CTTGATCAAC TTCAATGACT AACTCTGGTT 
TTCTTGGTTT AGTTGCTAAG TGTTTTGGTT TATCTCCGGT TTTATCCGGT 
TTGAACTACA ATTCGGTTTA GTTTCGTCGG TATAAATAGT ATTTGCTTAG 
GAGCGGTATA TGTTTCTTTT GAGTAGTATT CATGTGAAAC AGAATGAATC 
TCTCTATAAC ATATTATTTT AATGAATCTC CTTTGCTAAG AAAAAAAAAA 
AAAAAA

Gene models with high sequence identity

  1. AT4G37750.1 [+] show detail - Integrase-type DNA-binding superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.5e-26
HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.8e-34
Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.4e-11
Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.9e-15
superfamily DNA-binding, integrase-type 2e-20
superfamily DNA-binding, integrase-type 3.4e-19
HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.3e-13
HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.9e-14
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.2e-06
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.2e-06
ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 18.755
ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 18.966

See the detailed result >

AT4G37750.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.
Computational Description
AINTEGUMENTA (ANT); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G72570.1); Has 7251 Blast hits to 5191 proteins in 264 species: Archae - 0; Bacteria - 9; Metazoa - 18; Fungi - 8; Plants - 7086; Viruses - 4; Other Eukaryotes - 126 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-F19 introduced

  • F08302 - Specific phenotypes were NOT observed.
  • F18522 - Specific phenotypes were NOT observed.
  • F22615 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found