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  3. RAFL06-86-G13

RAFL06-86-G13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17264)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-G13 - full reading 
CCCGCTCCTC TCTTCCTTGC CAGAATCCTG AGTTTCTCTC TGACTGTGCT 
TAGTTCCATC ATAACTATAT CGTTCTGATT GCAGTTTCCG TTTCGATTAT 
CGTTAATGGT GTTTTTGTTT CCGGGAAAGT GATAAACTTT GAAGCGCGAT 
TTTGGTGTTC TAAAGCAAGT TCGAGAAGGG GATCAGAAGA TACATTTACA 
ATCTCTCGAG TACGATTCGG TTCATGGAAT CAATCGAGCA GTCTATAATC 
CCAGGTTTGC CTGATGATTT GGCTTTGAGA TGCATAGCGA AGCTTTCTCA 
TGGGTATCAT GGAGTGCTCG AATGTGTTTC CAGAGGCTGG AGAGATTTAG 
TTCGTGGTGC TGATTACTCG TGCTATAAAG CTAGAAATGG ATGGTCAGGG 
AGCTGGTTGT TTGTGTTGAC GGAACGTTCT AAGAATCAGT GGGTTGCTTA 
TGATCCTGAA GCTGATCGAT GGCATCCATT GCCTAGAACT AGAGCTGTTC 
AAGATGGTTG GCATCATTCT GGTTTTGCGT GTGTTTGTGT TTCCAATTGT 
CTTCTTGTGA TTGGGGGTTG TTATGCGCCT TCGGTGTCAT CGTTTCCTCA 
TCAGAAGCCT GTTGTCACTA AAGATGTCAT GCGGTTTGAT CCGTTTAAGA 
AACAATGGAA AATGGTTGCT AGTATGCGAA CACCACGGAC TCACTTTGCT 
TGTACTTCTG TCTCTGGCAA GGTTTATGTT GCTGGAGGTC GTAATTTAAC 
TCATTCCAGG GGAATCCCAT CTGCTGAGGT TTATGATCCT GTCGCTGATA 
GGTGGGAGGA ATTACCAGCA ATGCCTAGAC CACAGATGGA CTGCTCGGGG 
TTATCGTACA GAGGCTGCTT TCATGTTTTA AGTGACCAGG TGGGATTTGC 
AGAGCAAAAT TCATCTGAAG TTTTTAATCC ACGAGACATG ACTTGGTCCA 
CTGTGGAGGA TGTCTGGCCT TTCTCTAGAG CCATGCAGTT TGCTGTTCAG 
GTGATGAAAA ATGATCGGGT GTATACTATT GTAGATTGGG GAGAAAGCTT 
GATCAAGACT AGGGATACAG ATGAAGGGGA ATGGTACAAT GTTGGTTCAG 
TTCCTTCTGT TGTTCTTCCT AATCATCCGA GAGAGTTAGA AGCCTTCGGT 
TATGGGTTTG CAGCTCTAAG GAATGAACTC TATGTTATAG GAGGTAAGGT 
CCTTAAATGG GAAGAATCAG GGGCAGGGAG ATTTGACATT GTGAGATTGC 
CTGTTGTGAG GGTATGTAAC CCTTTGGATA GACCTCTGAA TTGGAGAGAG 
ACCAAACCAA TGTGCATTCC AGCCGGTGGG TCGATCATTG GTTGTGTATC 
CTTGGAAGAA TCTTCTCCCC CTTAACCAAG TGTGTTCCTT CTCTGAGTAA 
GACCTTGGTC CCACTGTGAA AGTGGAAGCT TTTGCTGTAA TACTCACTGC 
ACAGACATCT GGACACTTGA GGCTAACTGG AAACCGTGAG GGTGAAAACA 
GTTGTTTTAA AGGGAAGTAG TTACCGAAGA AGTCAACCTA TAATGCATTT 
ATCTTCCAGG TAAAGGCTTC CACTTTTATG TGAATGAGTT CAGTTTGTCA 
TCCTATGATA TGATTACTGC AAGAAGGTTA CCGGCCGTGG TCAGGCCATT 
ACTGTCACTC ATATTTGGAA TTAAACTTGT ACATAATAAG ATTCATGTTA 
TATCTCAGTG TATTTGAGTG TTAGTGATTG TTATGTGTTC ATTTGACCTA 
CACCAAGGTG TATCATGTGT ATAGACCAAA CACTTGAATG ATAAATTAAG 
AGTGATACAA ATAGTTTGCT TCAAAAAAAA AA

Gene models with high sequence identity

  1. AT1G16250.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Kelch repeat type 1 8.7e-09
HMMPfam Kelch repeat type 1 6.9e-11
HMMPfam F-box domain, cyclin-like 6e-05
HMMSmart Kelch repeat type 1 3.4e-06
HMMSmart Kelch repeat type 1 1.8e-06
Gene3D Kelch-type beta propeller 1.6e-46
superfamily Galactose oxidase/kelch, beta-propeller 6.1e-44
HMMPanther KELCH-RELATED 5.1e-18
HMMPanther Kelch related 5.1e-18

See the detailed result >

AT1G16250.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G63220.2); Has 9062 Blast hits to 5094 proteins in 277 species: Archae - 4; Bacteria - 620; Metazoa - 6949; Fungi - 23; Plants - 1110; Viruses - 34; Other Eukaryotes - 322 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-G13 introduced

  • F23116 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found