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  3. RAFL06-86-K13

RAFL06-86-K13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03896)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-K13 - full reading 
GAATCTCTCC CTCTTTCTTC CATTTCCCAG AACTCTCAGA GTTTCGCCAC 
TTCTTCTGAA GAATCTGAAA GATCACAAAG TCCAAAGAAA AAAAATGAGC 
GTGATCACAA CTCCAATAGA GACCCTGCAC CTAAAGTCAA CACTTCGTCT 
TCTACCACGA GCTGTTTATC GCAGTCAACG GATTCAAGTT TTCCCGCCCA 
ACATCTTCTC GAACACTTCT CTGAGTTCTC CACTTCGCAT CGACCCAATC 
TCTCAAGTTG GCGGATCGAG GAATTTGTGG CGTAGATATG CATCTGATAA 
TTTCTCGGAG ATGGGTTTGG ATCCTGGAGC TGATCCATTC AAGGTTATTG 
AGAAGCCTTC TATAGTGGAT AGAATGAAGA AAGCAAACTC AATTCTTCCT 
CATGTAGTGT TGGCGAGTAC AATATTAGCT CTTATCTATC CTCCTTCTTT 
CACTTGGTTT ACGTCGAGGT ACTTTGTGCC CGCTTTAGGT TTTTTGATGT 
TTGCGGTTGG TATCAATTCA AACGAGAAAG ACTTTCTTGA AGCTTTCAAA 
AGACCAAAAG CTATCCTCCT CGGTTATGTT GGACAATATC TCGTAAAGCC 
TGTCCTAGGT TTCATCTTTG GCCTAGCTGC TGTTTCTCTT TTCCAACTCC 
CAACTCCAAT TGGTGCTGGA ATCATGTTGG TATCATGTGT TAGTGGAGCT 
CAGTTGTCAA ACTATGCGAC ATTCCTAACT GATCCAGCAT TGGCACCTCT 
TAGCATCGTC ATGACATCTC TATCAACCGC TACTGCGGTT CTTGTCACAC 
CGATGCTATC ACTCCTGCTC ATTGGGAAGA AACTACCCGT TGATGTAAAA 
GGAATGATAT CCAGCATTCT TCAGGTTGTA ATCGCACCAA TCGCTGCAGG 
ATTGCTACTA AACAAGTTGT TCCCAAAAGT ATCAAATGCA ATCCGACCAT 
TTCTCCCGAT TCTATCGGTT CTCGACACAG CTTGCTGCGT TGGAGCACCA 
CTCGCATTGA ACATAAACTC GGTCATGTCT CCATTTGGAG CCACCATATT 
GTTACTAGTA ACAATGTTTC ATCTCTCAGC TTTCCTCGCT GGATACTTCC 
TTACCGGTTC TGTCTTTAGA AACGCTCCAG ACGCTAAAGC CATGCAAAGA 
ACATTGTCCT ATGAAACTGG AATGCAGAGT AGCCTTTTGG CTCTAGCGCT 
TGCTACTAAG TTCTTTCAAG ATCCTCTTGT GGGGATTCCT CCTGCTATAT 
CTACGGTGGT AATGTCATTG ATGGGGTTCA CTCTCGTTTT GATCTGGTCT 
AAGGAAAAGA GTAACACATT TTAACATTTT GATTTTGTTT CACTCCACAT 
TTTGATTATA CATATATATA TGTACTACAA ATAATTGGAA AATTCTTCTT 
GTAATATAAA TAATTCAATA CAGAATTTGA GATTTTTAAT GTACTAATCT 
CCATTTTGTC TTTAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT4G22840.1 [+] show detail - Sodium Bile acid symporter family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Bile acid:sodium symporter 2.5e-76
HMMPfam Bile acid:sodium symporter 2.3e-47

See the detailed result >

AT4G22840.1

Model type
Protein coding
Short Description
Sodium Bile acid symporter family
Computational Description
Sodium Bile acid symporter family; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); BEST Arabidopsis thaliana protein match is: bile acid transporter 5 (TAIR:AT4G12030.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-K13 introduced

  • F02716 - Specific phenotypes were NOT observed.
  • F03905 - Specific phenotypes were NOT observed.
  • F25942 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found