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  3. RAFL06-86-L08

RAFL06-86-L08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03897)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-L08 - full reading 
GTCTTCTTCT TTTTAACTTT CTTTTGTAAT CTCTTGTCTG AAAAAGAAAT 
GGATCATGTA AGTTCAAGTG AGTTACTTAT TGATGATCTT CTTGAGGATT 
ACTGGTTCTT TGAGAACTTA TTTACAAGAA GGTCGAGAGG CTTAAGGTAT 
TGTCACTCAG ATCCTTACCC CTCTTCTTCT TCTACTTCGA CTTCTCCTGA 
AAAAATGGGA GATTCAGATA TTGGGAAGGT TCTAGAAGCT TCCACAGGGC 
GATCTTTAAT CAGGGCATCT TCTATAGATA GTAGAGAAGG CGGATCTCAG 
ACGAAGCTGA CGGGCCGGTT CTCTGAAAAG ATTAGGGTTC AAGAACAGAG 
ACAAGTTGGG TCTTCCTTGC AGAAGAAGGA ACATGTGGTT CTTCCTAAAT 
CTGGATCTCG TTCGGCTCCG GGGAAGATTC AAGAAGCTTC CACAAAACGT 
GGTTTGATCC GGGCACCTTC TTTGCCGCCT CAGATAGAAA AACGAGAGAT 
GGACCGCGAG GCAAAGAAGA TGATCAATAA GCTGACAAGG CAGTTCTCTG 
AGAAGATTAG GGTTCTAGAA CCGACGAGGC CTGGTGAGCA TTTCTTGCAG 
AAAAAGGAAA CTATTGCTCG AGACAAAGGG ATTACTGAAA GTTCTAGAAG 
CAACAAAACA GGAAGTAGCA GTAGTTATAG TAGTGTCAAG ATCAGTTTGC 
AAAGAACTCA AACGATGCCA AATAACATGG GAAGAGAAGA AGATAACGAG 
GAAGACGAGT TTGAAGATCA AGAAAGCGAC TCAAGAATGG GATTCTTGAT 
CCGTGAAGCC CTGGCTAGTT CACATTATGT TCCAAAGGTT TCAAACAATC 
AAAGGCAGAG ACCACCAAGA AGCTTGAGAT TAGAAGACAC TGCTATGGTC 
AAACAAGGTG GCTCAAGTCC CAAAACGCTG CGTAAAACGT TAAGCAGCGT 
AGAAACAACC AAAGAGATTC AAAGGCTGAA AGGTTATGAC CAACTGGTCG 
AGCCACGTGT CGCAAGTGGA TTAGCTACAC CACCTAGGGT TCCAAAGGAT 
TCAAGTAAAG AAATGAAGGA TCAGATCAAG TTTTGGGCTC GAGCCGTAGC 
TACTAATGTC CGACAAGAGT GCTAAGATTT TTCTTACACT AATTAACTGT 
ATTTCGTACA GATGATTCTT ATCTTGAACT CTTTTGTGTG TTTTGTTTTT 
CTGATCCTCC TGAAATAATG AGATTCCTCT GTTTATGTGA CAAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT1G53180.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G53180.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15115.1); Has 58 Blast hits to 56 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-L08 introduced

  • F04122 - seed::increased size
  • F14209 - Specific phenotypes were NOT observed.
  • F19348 - Specific phenotypes were NOT observed.
  • F28617 - seed::decreased width

Mutant lines with disrupted or induced

10 mutant lines found