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  3. RAFL06-86-M10

RAFL06-86-M10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03900)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-M10 - full reading 
ATTTTCGGCA AAATAAAAAA CAAATGTTGC AATTTCCTTG AATGATTCTT 
CTGGTTAACG GAGGAGCCGC TACTTCAATC CATCCCAACG CCGCTCGATT 
TTATCGAATT GGGACCATGA GTCGCCAAAT TCACGGAGCT GTATCTTCTT 
CTAAGCACAT CTCCTTAAAA ACCCAACACC CCCTCTCAGA TTCCAACTCA 
GCCTATGGAG CTTCTGGGTC GGAGACTCGA GTGTATACCC GGAAAAAAAG 
GCTAAAGCAG GAACCTTTTG AGCCTCTGGA GAAATATTCC GGCAAAGGAG 
TCAATACCCA CAAACTGTGT GGTTTACCCG ATATAGAAGA TTTTGCTTAC 
AAAAAGACTA TTGGATCTCC TTCATCTAGC AGGTCAACGG AAACTAGCAT 
CACTGTGACT TCAGTCAAAA CAGCAGGATA TCCGCCTGAA AACTGGGTCG 
AAGTGCTCGA GGGTATTCGT CAAATGAGAT CTTCTGAAGA TGCACCAGTT 
GATTCTATGG GATGTGATAA AGCCGGAAGC TTTCTACCTC CCACGGAAAG 
AAGATTTGCT GTCTTGCTAG GAGCACTTCT TTCAAGTCAG ACAAAAGATC 
AAGTTAATAA CGCGGCAATA CATCGTCTTC ATCAAAACGG CCTTCTTACT 
CCCGAAGCGG TTGACAAAGC TGATGAATCA ACCATAAAAG AATTGATCTA 
TCCGGTTGGA TTTTATACAA GGAAGGCTAC CTATATGAAG AAAATAGCTA 
GAATTTGTCT AGTGAAATAT GACGGAGACA TTCCAAGCTC TTTGGACGAC 
CTGCTGTCTC TTCCAGGGAT TGGTCCCAAG ATGGCCCATC TGATTCTGCA 
TATAGCATGG AATGATGTCC AAGGCATATG TGTAGACACA CATGTGCATC 
GCATTTGCAA TCGACTTGGT TGGGTGTCTC GTCCAGGAAC CAAACAGAAA 
ACTACATCTC CAGAGGAAAC AAGAGTAGCT TTGCAACAAT GGCTTCCAAA 
GGAAGAATGG GTTGCCATTA ACCCGCTTTT GGTGGGGTTT GGACAAATGA 
TTTGCACACC AATAAGACCA CGCTGCGAAG CCTGCAGTGT CAGTAAGCTT 
TGTCCTGCTG CATTCAAAGA AACATCAAGC CCATCTTCCA AGTTGAAGAA 
ATCTAACCGA AGCAAAGAAC CATGATCCGA AGTCCAAGAC TTTTGTATTT 
TGAGTAAAAC AAAAAAAAAA ACCATTTTTT GATTAGTTTC TCTTTGCATC 
CAAGAAAACT GTTAGAGCTT CGAGGCTTGC AATGTTGATA ATGAAAACTT 
GTCGATGTAT ATTAATTAGG AAGCTTGCAG GTAATTAATT AATTACAAAA 
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT2G31450.2 [+] show detail - DNA glycosylase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Helix-hairpin-helix DNA-binding motif, class 1 0.409999992938068
PatternScan Endonuclease III, conserved site-2 0
HMMPfam HhH-GPD domain 3e-18
HMMPfam Helix-hairpin-helix motif 3.6e-06
HMMSmart Endonuclease III-like, iron-sulphur cluster loop motif 8.09999844976855e-05
HMMPanther PTHR10359 1.39999277195138e-102
PatternScan Endonuclease III, iron-sulphur binding site 0
HMMPanther PTHR10359:SF2 1.39999277195138e-102
Gene3D G3DSA:1.10.1670.10 2.39999798157241e-34
HMMSmart HhH-GPD domain 2.99998750445706e-52
superfamily DNA glycosylase 1.3e-59

See the detailed result >

AT2G31450.2

Model type
Protein coding
Short Description
DNA glycosylase superfamily protein
Computational Description
ATNTH1; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding site (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14133 Blast hits to 14127 proteins in 2683 species: Archae - 365; Bacteria - 9377; Metazoa - 224; Fungi - 192; Plants - 158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-M10 introduced

  • F13933 - seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found