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RAFL06-86-N14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07744)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-N14 - full reading 
AAACACTAAA ACGAAGCTCA AAAGTATGGC TACAAGAGCT TCGTTCAAAC 
CTAAACATTT TCTGGGGAAC AATCGAATCC GAAATCTCCA AAAACGGTGC 
CGCTTCATAT ATCTTCCCTC TCCAACGTTG CATCTTCAGT TTCCTCTGCG 
CCTCTCTCGC CGGCGTTGAC GCTTCCGTAT CGCCGGACAT CGCTGAGAAC 
GGTTGGAAAA CAATCAATAC TTGGCTTGCG TTGCAAGTTA TTCCCACTGC 
TAAACTTGGC GTAGTTCCTC AGCCTCTTGA AGAGATTTTA CTTCATACTT 
GGCCTTATCC TTCTCTCTTA ATCGCCGGAA ATTACAAAAA GCTTTACAAT 
TTCATCGACG AGAACGCCGG AGATTGTCTC CGGTTAGGTC AAGAAGAATT 
CGGGTTGACC CGAGATGAGG CTATTCAAAA TCTTCTCTTT GTTTTAGGTT 
TTAATGCCTA CGGGGGCTTT TCCGTCTTCT TACCTTCTTT GATCGGGAGA 
ATAACCGGCG ACAATTCCGG TTTACAGGAG AGGATTAGAA CCGAAGTCAG 
GAGAGTTTGC GGATCCGGGT CGGATCTTAA TTTCAAGACG GTTAACGAAA 
TGGAGCTGGT TAAATCCGTG GTTTACGAAA CGCTGCGTTT TAGTCCTCCG 
GTTCCGCTGC AATTCGCACG TGCGAGGAAA GATTTTCAGA TAAGTTCACA 
CGATGCTGTT TTTGAGGTCA AGAAAGGTGA GCTTCTTTGT GGTTATCAGC 
CGCTTGTGAT GAGAGACGCT AATGTTTTTG ACGAACCGGA GGAATTTAAA 
CCGGACCGGT ATGTAGGTGA GACCGGGTCT GAATTGCTGA ATTATCTCTA 
CTGGTCTAAC GGTCCACAAA CCGGTACCCC GAGCGCGTCG AACAAACAGT 
GTGCAGCTAA GGACATTGTC ACTCTCACGG CTTCCTTGCT CGTTGCCGAT 
TTATTTCTCC GGTATGATAC GATTACTGGT GACTCCGGTT CAATTAAAGC 
TGTTGTTAAA GCTAAATAAG TTAAAGATTG ATTAGTGTTT AATGTTATGT 
AATCAATCTT CAACGGTTTC ATTTGTTCGG AGTGTATAAA TTATATGTAA 
ACTAAAATAA TCCGAATTGA AACTCAAATT GTTATGGTAA AAAAAAAAAA 
AAAA

Gene models with high sequence identity

  1. AT4G15440.1 [+] show detail - hydroperoxide lyase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Cytochrome P450 1.4e-15
Gene3D Cytochrome P450 7.79998304125632e-25
superfamily Cytochrome P450 1.1e-32
HMMPanther Cytochrome P450 1.29999924468183e-19
FPrintScan Cytochrome P450, E-class, group IV 3.6000003870074e-08
FPrintScan Cytochrome P450, E-class, group IV 3.6000003870074e-08
FPrintScan Cytochrome P450, E-class, group IV 3.6000003870074e-08

See the detailed result >

AT4G15440.1

Model type
Protein coding
Short Description
hydroperoxide lyase 1
Curator Summary
Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.
Computational Description
hydroperoxide lyase 1 (HPL1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: fatty acid metabolic process, response to wounding; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403); BEST Arabidopsis thaliana protein match is: allene oxide synthase (TAIR:AT5G42650.1); Has 6712 Blast hits to 6702 proteins in 615 species: Archae - 25; Bacteria - 392; Metazoa - 3265; Fungi - 548; Plants - 2246; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-N14 introduced

  • F02636 - Specific phenotypes were NOT observed.
  • F03501 - Specific phenotypes were NOT observed.
  • F23723 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found