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  3. RAFL06-86-N24

RAFL06-86-N24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03902)

full reading [+] show sequence

Nucleotide sequence: RAFL06-86-N24 - full reading 
CTCTCTCTGC ATGCATCTTT CTCTCTATTA ATCTCTCCAG TATTTGTCAG 
GATTTGGGTA TTTTTTTAAT AACGATCAGT GTCCAATCTC TCTTATCGTC 
TTCATAAGTT TCCTATTATT TCATTCTTCT TCTTCTTTAT TCTCATTTCT 
CTCTCTCTCT CTTTTTACTC ACAGACAAAT CTTTTTCACA TCTCTTTGCA 
AATTCTTGAG AATTCATTCA AGTTACATAA AAAGCTGAGA GCAATGAAGA 
AAATTGTGTT AAAGCTGGAT TTGCATGACG ATAGGGCAAA ACAAAAGGCC 
CTTAAAACGG TTTCTACTCT CCCAGGAATC GATTCCATTG CAATGGACAT 
GAAGGAGAAG AAATTGACGG TTATTGGAAC CGTGGATCCG GTAAATGTAG 
TAAGTAAGCT AAGAAAGTAT TGGCCGATGA CGGATATCGT ACTAGTGGGA 
CCTGCGAAAG AGCCGGAAAA GGAGAAGAAG GAGGAGCCGA AGAAGGAAGG 
TGGTGGCGAG CCGCCAAAGA AAGAAGGAGA AGCTCCAAAA GAAGAAGGGA 
AAAAGGAAGG AGAAGCACCG AAGAAGGAAG AAGAGAAGAA AGAAGGTGGC 
GATAAGAAGG AAGGAGAGAA GAAAGATCAA CCACAAGCGC AGCCGCAACC 
AGTTGTGCCG CCACCTGATC ATGTGTTGGA ACTTGTAAAG GCGTATAAAG 
CATATAATCC TCACCTAACA ACGTATTACT ACGCCCAAAG CATCGAAGAA 
AACCCTAATG CTTGCGTTAT ATGTTGAAAT ATTTATAATG TGATATATTT 
TGGGGAAAAG ATGGACCGAT CTATATATAG TCATGAGGAT GAAGAATAAG 
AAACAAAGGA TATATCTTAG ACTTCGGATG GGATCGGATA TGTTTTTGTC 
TCCTCGATAA TGCGGGGAAG TTTTATTTCC TTAAATCGAT TTCGATGATA 
TGTTTTGTGT ATATATCGTC GATAGTACTA GAATTTTATT TTTTCACTTT 
GAAGGTAACT TTCTGTAAAG AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT1G01490.1 [+] show detail - Heavy metal transport/detoxification superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Heavy metal transport/detoxification protein 4.1e-07
superfamily Heavy metal transport/detoxification protein 5.5e-06
HMMPanther UNCHARACTERIZED 7.2e-82
HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 7.2e-82

See the detailed result >

AT1G01490.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1); Has 7083 Blast hits to 3987 proteins in 399 species: Archae - 47; Bacteria - 875; Metazoa - 1731; Fungi - 337; Plants - 1157; Viruses - 96; Other Eukaryotes - 2840 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-86-N24 introduced

  • F11336 - rosette leaf::decreased width / rosette leaf::present in greater numbers in organism / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

12 mutant lines found