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  3. RAFL06-87-C06

RAFL06-87-C06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03909)

full reading [+] show sequence

Nucleotide sequence: RAFL06-87-C06 - full reading 
AAAAACTTCC CAATTCCATT CCTCTTCCTC TTCCTTCTCC TTCTTCTTCT 
TCTTCACCAT TTATTTCTCA TCATCATACT TATAAAAAGT AAATCAGAAT 
CCCGAAGCAA ACTTTCAATC TTCCATCATC ATCATCATGT CCGATACACA 
TACATACATA CATATCTTTC GTGTGATTTA TACTTATTAA AGAGAGATTC 
TCTCATTAAG AAGAAGCTTC CTTCTTTCTT TTCTTTTTCT TCTCTCTGTT 
CATGGCGGTT CAAGCTCATC ACCATCCTTC TACTCTCTTC TTCCTCAACA 
ACGGACAAGA AGGGAATGAT CAGCCGCATA AATCTCAGTT TCATTCAATC 
AACGCCGGGG TTGATACAAG AAAGCGAGCG AGAGAAGTTT CTTCGGTGAT 
TGATTTAGAT ATCACGGCGG CTCCGATGAA CCCTCCGCCG CAAACTCCAC 
CGCAAGTTAT AGGACGTCGA CAAAATCCGA ATGTTGTATC AACCGGTCTA 
CGTTTGTCTC GTGAACAGTC GCAGAATCAA GAACAACGGT TTTTGTCTTT 
TCCGATAACC GGAGATGTCG CCGGAGAAAT CAAAAGCCAA ACGGACGAAT 
TAAATAGATT TCTTCAAATC CAGGGAGAGC AGCTTAAGCG CATGTTAGCT 
GAAAACAGTG AGAGGAACTA TCGTGAGCTT CTGAGAACAA CGGAAGAATC 
AGTAAGGCGG AGATTAAGAG AGAAAGAAGC GGAGATCGAG AAAGCCACAC 
GTCGTCATGT CGAGCTAGAA GCACGTGCGA CTCAGATCGA AACAGAGGCA 
CGTGCTTGGC AAATGAGAGC AGCTGCTAGA GAAGCCGAAG CGACGTCGTT 
ACAAGCTCAA TTACACCAAG CCGTAGTAGT AGCTCACGGT GGCGGAGTTA 
TTACGACGGT GGAGCCACAA TCGGGAAGCG TAGACGGTGT GGATGAAGCT 
GAAGACGCCG AATCGGCTTA TGTGGATCCC GACCGGGTCG AAATGATTGG 
ACCGGGATGT AGGATTTGCC GGCGGCGATC GGCGACGGTG TTGGCTTTGC 
CGTGTCGTCA TTTGGTTATG TGTACAGAAT GCGACGGCTC CGTGAGAATT 
TGTCCGCTTT GCCTTAGCAC GAAGAATTCA AGCGTGGAGG TTTTCTATTC 
TTGATGGGCC ATTCTATAAT GGGCTTATCA GGCCCAATCA AATGGAATTT 
AATAATAATA ATAAAAATAT AAATTAAATT TATCATTTAT ATAAACTATA 
TATGTAGTAT ACTGTTGAGC TCATTATTGA ATAGCTTGAG AGGTTTGATG 
TACATAGCCA CCACATGCAG TGAGCTTCTT CTTTTTTTGG TCTTTAGGAA 
TTCTTTTGAT TTCGTAATAA ATCAACCTTG ATTGTTTAAT TTTTAATTAC 
TTTACATATA TAGCATTTGA TACGATATGA TTTATTTATG ATGTTTTAGT 
AGAGGATGAG ACATGATTTA GTATTATTTT CAAATGTTTT GTATTGTTAT 
AATATTTGTA TTCTAATTAA GAATATTCTA GGGTTTTTGT GTTTTTAAAT 
ATCTATTTGT ATAAAGCATG TTCATTATTT CTTGTTTTTG GTTGAGCTCA 
ATGTATTTTT ATGGAATTTT AAACTAAGCG AACAATTATC TTAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

  1. AT5G47050.1 [+] show detail - SBP (S-ribonuclease binding protein) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther INHIBITOR OF APOPTOSIS PROTEIN 1 AND 2, IAP1, 1.5e-08
HMMPanther INHIBITOR OF APOPTOSIS 1.5e-08
ProfileScan Zinc finger, RING-type 9.435
Coil coiled-coil 0
HMMPIR S-ribonuclease binding protein, SBP1, pollen 4e-149

See the detailed result >

AT5G47050.1

Model type
Protein coding
Short Description
SBP (S-ribonuclease binding protein) family protein
Computational Description
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT4G17680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-87-C06 introduced

  • F30112 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found