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RAFL06-87-F06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07748)

full reading [+] show sequence

Nucleotide sequence: RAFL06-87-F06 - full reading 
GTGTGAATCT CTCATCGTTC TCTCAAATTT CGTGTTTTTG TAACCGGACG 
GAGAACCTTT CACGATGTCT GCAAACCAGG AGGAAGACAA GAAGCCAGGA 
GACGGAGGAG CTCACATCAA TCTCAAAGTC AAGGGACAGG ATGGAAACGA 
GGTTTTCTTT AGGATCAAGA GAAGCACTCA GCTCAAGAAG CTGATGAATG 
CTTACTGTGA CCGGCAATCT GTGGACATGA ACTCCATTGC TTTCTTGTTT 
GATGGGCGTC GTCTTCGTGC TGAGCAAACT CCCGATGAGC TTGACATGGA 
GGATGGTGAT GAGATCGATG CGATGCTCCA TCAGACTGGT GGCAGCGGTG 
GTGGTGCTAC GGCCTGACAC TTCGTCCAGG TTTAGGGCTT GTGTGTGATA 
TGAATGGTTA AGGAGTAATC GGCATTAGGA TTTGCAGACT TGTTTTTTTA 
TCGTGACCAT TCTCTTTAGA AACTAAGTTA TTATGGTCAC GAAGGTTAAA 
GAACCCTTTG GTTGATTTTT TGTCTTGTTC GTTTGGTATC GGATCCTATG 
ATACTACTAT TTCGGCTTAA AGGTGTTATT AACC

Gene models with high sequence identity

  1. AT4G26840.1 [+] show detail - small ubiquitin-like modifier 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 5.9e-33
HMMPfam Rad60-SLD 4e-26
superfamily Ubiquitin-like 9.3e-25
ProfileScan Ubiquitin supergroup 16.385
HMMPanther UBIQUITIN-LIKE PROTEIN SUMO/SMT3-RELATED 1.9e-47
HMMSmart Ubiquitin 1.7e-15

See the detailed result >

AT4G26840.1

Model type
Protein coding
Short Description
small ubiquitin-like modifier 1
Curator Summary
Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.
Computational Description
small ubiquitin-like modifier 1 (SUMO1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-87-F06 introduced

  • F01806 - Specific phenotypes were NOT observed.
  • F27935 - rosette leaf::decreased size / fruit::abnormal / stem::present in greater numbers in organism / stem::abnormal / fruit::abnormal / stem::abnormal / rosette leaf::desaturated green / stem::decreased thickness / stem::abnormal / cauline leaf::desaturated green / stem::abnormal / fruit::abnormal

Mutant lines with disrupted or induced

6 mutant lines found