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  3. RAFL06-87-I20

RAFL06-87-I20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07759)

full reading [+] show sequence

Nucleotide sequence: RAFL06-87-I20 - full reading 
ACAAATCACA AATCACATCT CTTCATCTTC CTCGGTTTAT CCAAATCCTC 
ATTCAGACTT CATCAAATCG TTTCTTGCTT CCGATCCGAA ATTTGCGGCG 
GGAAAAGAAG ATAACATCAA CAAAAAAATG ATTTCTCTAT TCATCTCAAA 
CTTTTCAAAC TTATCAAACT TATCTCCGAC CTTTGATAAC ATGAACATGA 
ACATCCCATC GAAGAAGATC GTACCGGTAC CGACACCGAG TGAGAAAGTT 
GTCTCTTTGG TATCTCGAAC CGGACGAGAT CTCCAACGTT ACAACACCGC 
AGGGTATCGT CAAGTCGTCG GATGTGTACC ATATAGATAC AAGAAACACG 
GAGGAGGAGA AATTGAAGTG CTTTTGATAA GTGCACAGAA GAAAGGGAAA 
GGAATGTTAT TACCAAAAGG AGGTTGGGAG ATTGATGAAT CAATAGAAGA 
AGCTGCTTTA AGAGAGACAA TTGAAGAAGC TGGTGTTACG GGTCAGCTTG 
AAGAATCACT TGGGAAATGG CAATACAAAA GCAAAAGACA TACTATGATT 
CATGATGGTC ATATGTTTCC TTTGCTTGTT AGTCAGCAGT TTGAGATATG 
GCCTGAATCT GAATTCAGAC AACGCAAATG GGTTTCTTTG TCTGAAGCGA 
TTGAGTTGTG TCAGAATTCG TGGATGAGAG AAGCTTTGGA AGCTTTCATT 
AACCGGAAAT GCCAGACCCA ATAAGGATAA TGTAGCATCT CTGGGAACAA 
AGAGCTCTTC ATTTGGAAGC AGATGCATAT AATTGAAGAG CAGGTCCTCA 
AGTTTAGTGT TCTGATTTGA TTCATTCATT TGTTAATGAT GTTAGTAGAC 
TAATTGATAA TAACTGATTG TTCTGAATGA TTGTCTTCAC AACATGTAAT 
GTGTACATAT ATAAAATGGA TCAATCTCAT AGATGT

Gene models with high sequence identity

  1. AT1G73540.1 [+] show detail - nudix hydrolase homolog 21
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D NUDIX hydrolase domain 1.4e-19
superfamily NUDIX hydrolase domain-like 1.3e-26
HMMPfam NUDIX hydrolase domain 2.9e-16
PatternScan NUDIX hydrolase, conserved site 0
HMMPanther DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROL 5.1e-26

See the detailed result >

AT1G73540.1

Model type
Protein coding
Short Description
nudix hydrolase homolog 21
Computational Description
nudix hydrolase homolog 21 (NUDT21); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 4 (TAIR:AT1G18300.1); Has 1276 Blast hits to 1275 proteins in 388 species: Archae - 3; Bacteria - 524; Metazoa - 249; Fungi - 131; Plants - 237; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-87-I20 introduced

  • F24033 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found