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  3. RAFL06-87-L05

RAFL06-87-L05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07764)

full reading [+] show sequence

Nucleotide sequence: RAFL06-87-L05 - full reading 
AATAAACGGA AAAACGAAAA GTGAAGAAAA ATGGGAGTAG TACTGATCGA 
TGGATCAACG GTACGATCTT TTGTAGACGA CGAAGAGCAA TTCAAAAAAA 
GCGTCGACGA GAGGTTCGCA GCTCTGGATC TGAACAAAGA CGGCGTTTTA 
TCGCGATCGG AGCTACGAAA AGCGTTTGAA TCGATGAGGC TACTTGAATC 
GCACTTTGGC GTTGATGTGG TGACTCCTCA GGACGAGCTG ACGAACCTCT 
ACGATTCGAT CTTCGAGAAA TTCGATACGG ATCAAAGCGG TTCTGTGGAT 
CTGGAGGAGT TTAGATCGGA GATGAAGAAG ATCGTGCTTG CGATTGCTGA 
TGGGCTTGGA TCTTGTCCGA TTACGATGGT GTTAGATGAT GATGATGATA 
ATTTCTTGAA AAAAGCTGCG GATTTGGAAG CTTCCAAGCT TGAGAAAGCT 
TCTTCGTAAT GGTGATGGAT GGTTTTGGGA TCTTTTTGAA ACTGTTTTCG 
TTTTGTTGTT GTTCATGTTT TGATGTAAGT GAGAGTTTGA ATAAATAAAA 
CTTTGTGAGA TTTTTGTGCT TT

Gene models with high sequence identity

  1. AT2G44310.1 [+] show detail - Calcium-binding EF-hand family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam EF-hand 2.6e-06
superfamily EF-hand 1.2e-11
ProfileScan EF-HAND 2 11.556
ProfileScan EF-HAND 2 11.501
HMMPanther CALCIUM BINDING PROTEINS 3.2e-06
PatternScan EF-Hand 1, calcium-binding site 0
PatternScan EF-Hand 1, calcium-binding site 0
Gene3D EF-hand-like domain 4.7e-08
HMMSmart Calcium-binding EF-hand 0.11
HMMSmart Calcium-binding EF-hand 0.01

See the detailed result >

AT2G44310.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G54530.1); Has 278 Blast hits to 269 proteins in 34 species: Archae - 0; Bacteria - 3; Metazoa - 2; Fungi - 2; Plants - 243; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-87-L05 introduced

  • F01230 - Specific phenotypes were NOT observed.
  • F05540 - Specific phenotypes were NOT observed.
  • F09033 - seed::increased size / seed::increased length
  • F10603 - Specific phenotypes were NOT observed.
  • F11509 - Specific phenotypes were NOT observed.
  • F14037 - Specific phenotypes were NOT observed.
  • F21228 - Specific phenotypes were NOT observed.
  • F27018 - Specific phenotypes were NOT observed.
  • F30534 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found