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  3. RAFL06-87-L14

RAFL06-87-L14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07765)

full reading [+] show sequence

Nucleotide sequence: RAFL06-87-L14 - full reading
AAAATCCTCC TTCGAAGCAG AAGTAACAGC AACCAAAAAT GACGACAATG 
GCGACACAAG GCGCTTGGCT ACGAATGACC TCATCAGCCA AGTCCATGAC
CAAGTCAACC GTGACTTCAA AGGAGCTTGG ATTCCTCACC TCCCAGCTCA
GCGGCTTAAG AATCTCATAT ACTCCCAGTG ACGTCATCAA CCGTATCTCC
CTTCCTTCGT TCCCCGGGAT TCAGCCAATC GTCGCACGTA GAATCTGCCC
TTTTACTGGG AAGAAAGCAA ACAGAGCAAA CAAAGTTTCA TTCTCTAACC
ACAAGACCAA GAAGTTGCAA TTCGTCAACT TACAATACAA GAGAGTTTGG
TGGGAAGCTG GCAAACGTTT TGTCAAACTT CGTTTATCAA CTAAGGCTTT
GAAGACCATT GAGAAGAACG GACTCGACGC TGTTGCCAAG AAAGCCGGCA
TTGATCTTCG CAAGAAATAG ATATGATGAT CGCAAAGTTT ATTATATACA
TTTCTTGCTT CTCCTTTTGC AGTACTCGTA CATTTCCTTT CTAGATTTTG
GTAAGTATCA ATGGAATCTC TGAGTTGTTG TATCAGACAC TGTCAAGAAA
AGACTTTAAA GAGAAAC

Gene models with high sequence identity

  1. AT2G33450.1 [+] show detail - Ribosomal L28 family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HAMAP Ribosomal protein L28 13.73
HMMPfam Ribosomal protein L28 1.8e-24
HMMTigr Ribosomal protein L28 4e-20

See the detailed result >

AT2G33450.1

Model type
Protein coding
Short Description
Ribosomal L28 family
Computational Description
Ribosomal L28 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28 (InterPro:IPR001383); Has 3594 Blast hits to 3594 proteins in 1265 species: Archae - 0; Bacteria - 2589; Metazoa - 1; Fungi - 7; Plants - 57; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-87-L14 introduced

  • F16736 - seed::increased size
  • F22810 - seed::increased size / seed::increased length
  • F23030 - Specific phenotypes were NOT observed.
  • F24209 - seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found