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RAFL06-87-L23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12267)

full reading [+] show sequence

Nucleotide sequence: RAFL06-87-L23 - full reading 
AACTCTATAT ATATCGCCCA GTCTTTTTAT CTCTCTGACT CTCTCTCTAT 
GGACGAGGCT ACCGGAGAAA CAGAAACTCA AGATTTCATG AACGTCGAAT 
CCTTCTCTCA GCTTCCTTTC ATTCGCCGTC CTAAAGATAA GAACCCTAAA 
CCCATTCGTG TCTTCGGAAA AGATTTCACC GGCAGAGATT TCTCTATTAC 
TACCGGTCAA GAAGACTACA CCGATCCTTA CCAGACCAAA AACAAAGAAG 
AAGAAGAGGA AGAAGACCAA ACCGGAGACA ACAGTACGGA CAATAATAGC 
ATCAGCCACA ACAGGAGATT CGAGTGTCAC TATTGCTTTA GAAATTTTCC 
TACTTCACAA GCCCTAGGTG GACACCAAAA CGCTCACAAA CGCGAACGTC 
AGCTTGCCAA ACGCGGTGTT TCCTCTTACT TTTATCATCC TGACAATAAC 
CCTTACAGTT ACCGTCATTA CCCGTCGTGG ACCAATGGTC CGTTAACCGC 
GGCTAGGTCC TATGGAGGAT TTTCTTCTGG TCCTAAGCCG TCGGGGTATT 
ATACACGACC CAGCTATGGG AGTCAGTTAG GACTATGGCG TCTACCGCCT 
CGCGTTCAAG GCGTTTATAA CTCAAACGCA GCGTTTACTA GTAATGGCTC 
TTCTTCTTCT TCTAATTCGA CTTTACCGTT GTTGACCCGT TCTCAAACTC 
AACTATCATC GCAAGTGGGT GGCTCCGCTG CTCAGAACAG AATGTCATCG 
TACGGTTACG GATTGAGCCC TAACGTGCAA GATCATGTGA GTCTCGATCT 
TCATCTTTAA AGATTTGAAA ACAAAATAAA ACTCTTATTG AGTGTTATGT 
AACTTAGTGC AAGAAAAAAC AACCTAAGTT ATTGAATATT ACGTAATCTT 
TAACGATTAG ACTTCTTATT ATCTATACCT ATTCCCTTAT TGAATGTTTT 
GTAAGGTAAG AAACGGCACG ATGTGTAAGA TTCACGGCAT CGATCTTTCT 
TTTTTTACCC ATACGTGCTT GAATGAAGGA AGGGAATTTA C

Gene models with high sequence identity

  1. AT3G58070.1 [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Zinc finger, C2H2-type 10.99
PatternScan Zinc finger, C2H2-type 0
superfamily C2H2 and C2HC zinc fingers 0.0000039

See the detailed result >

AT3G58070.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Curator Summary
Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile
Computational Description
GLABROUS INFLORESCENCE STEMS (GIS); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: trichome differentiation, trichome branching, response to gibberellin stimulus, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 8 (TAIR:AT2G41940.1); Has 936 Blast hits to 936 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-87-L23 introduced

  • F04424 - Specific phenotypes were NOT observed.
  • F21914 - Specific phenotypes were NOT observed.
  • F28320 - rosette leaf::decreased size / rosette leaf::upturned / rosette leaf::abnormal / cauline leaf::decreased size / stem::decreased thickness / stem::abnormal / cauline leaf::abnormal / stem::abnormal

Mutant lines with disrupted or induced

8 mutant lines found