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  3. RAFL06-88-F16

RAFL06-88-F16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17269)

full reading [+] show sequence

Nucleotide sequence: RAFL06-88-F16 - full reading 
CCCGGAATTG ATCGACTGGA AAACAGAGAA CCACCGTTTC TACAGTTGGA 
TATGGCTGGT GGGCAAATAG AGAAGCTAGT CAAATACAAG AGCACTGTCA 
AGGATCCAGG AACTCCTGGA TTTCTCAGAA TTAGAGAAGG GATGTTGCTC 
TTCGTCCCTA ATGATCCCAA ATCAGATTCT AAGCTCAAAG TACTTACTCA 
GAACATCAAA AGTCAAAAAT ATACCAAAGA AGGATCAAAT AAACCTCCTT 
GGCTCAATCT CACCAACAAG CAGGCAAAGA GTCATATCTT TGAGTTTGAA 
AATTATCCCG ACATGCATGC TTGCCGTGAT TTCATCACTA AGGCCCTTGC 
TAAATGTGAA TTGGAGCCTA ATAAATCCGT TGTCTCGACA TCTTCCGAGC 
AACTCAGTAT TAAGGAATTG GAGCTGCGCT TCAAGCTTCT GAGAGAAAAT 
AGTGAGCTGC AGAGATTGCA TAAGCAATTT GTGGAAAGTA AAGTACTGAC 
TGAAGATGAA TTCTGGGCTA CAAGAAAGAA ATTACTTGGT AAAGATTCCA 
TCAGAAAGTC AAAACAGCAG CTCGGGCTTA AGAGCATGAT GGTTTCTGGC 
ATCAAACCAT CTACTGATGG GCGGACTAAT AGAGTGACGT TTAACTTGAC 
ACCTGAGATA ATTTTTCAGA TTTTTGCTGA GAAGCCAGCT GTTCGGCAGG 
CATTCATCAA TTATGTTCCG AGTAAGATGA CAGAAAAAGA CTTCTGGACA 
AAATATTTTA GAGCAGAATA TCTTTACAGC ACCAAAAATA CAGCAGTAGC 
TGCAGCAGAA GCTGCTGAGG ACGAGGAACT CGCTGTCTTT CTGAAGCCTG 
ATGAGATATT GGCTCGGGAA ACTCGTCACA AGATTAGACG GGTTGATCCA 
ACTCTTGACA TGGAGGCTGA CCAGGGAGAC GACTACACTC ATCTTATGGA 
CCACGGGATC CAGCGTGATG GCACCATGGA TGTTGTTGAA CCACAAAATG 
ATCAGTTTAA ACGATCACTT TTGCAAGATC TTAATCGTCA TGCTGCTGTT 
GTATTGGAAG GCAGAAGCAT TGATGTTGAG TCAGAAGATA CAAGGATTGT 
TGCAGAGGCT CTCACACGGG TTAAACAAGT AAGCAAAGCT GATGGTGAAA 
CCACCAAGGA CGCTAATCAG GAGAGATTGG AAAGAATGTC CCGGGTAGCA 
GGAATGGAGG ATCTTCAAGC ACCACAAAAT TTCCCATTGG CGCCGCTTTC 
TATCAAGGAT CCTCGTGATT ACTTTGAATC TCAACAAGGA AACGTCCTCA 
ATGTACCCAG AGGAGCAAAG GGCTTGAAGA GAAATGTCCA TGAAGCTTAT 
GGATTACTAA AGGAATCCAT TTTAGAGATT AGAGCTACAG GATTAAGTGA 
TCCGTTGATT AAGCCTGAAG TTTCTTTCGA GGTTTTCAGT TCGTTAACCC 
GAACCATTGC AACTGCTAAA AATATTAATG GGAAGAACCC ACGAGAGAGC 
TTTCTGGACA GATTACCAAA GTCCACTAAG GATGAAGTTC TACACCATTG 
GACATCAATA CAAGAATTAC TGAAACATTT TTGGTCATCT TATCCGATAA 
CAACCACATA TCTTCATACC AAGGTTGGTA AACTGAAGGA TGCAATGTCC 
AATACATATT CAAAACTTGA GGCAATGAAA GAGTCGGTGC AATCTGATCT 
CCGGCATCAG GTTTCTCTAC TGGTTCGTCC AATGCAACAG GCTCTTGACG 
CTGCGTTCCA TCACTACGAA GTGGATCTGC AGAGAAGAAC AGCTAAGAGC 
GGCGAAAGAC CAAACGGCTA CGTATAGAGG ACAAAAAAAC TAAAACTAAA 
AAGCTTTGCA AGATCTTTGA ATTGTTTCAT CAGCCTTGGT TGGTGTTTTT 
GAAAATCTTC ATTTGTCCCT TTTTGTCCGA CCATTGAGAT ACAAAAATGC 
GTTTATATTG TAGTAATATT TTCTTTTCTT TTTTTTGTTA ATTAGGCGTT 
ATATTGTTAA CTGCGAGAGA CAACAAAGAG ATTTTCTCGA TCTGAACATT 
TTTAAGTTTG CAATGTATTA GTAAATTCTC TAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G55750.1 [+] show detail - BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam BSD 0.0000000025
HMMPfam BSD 0.00000000000017
superfamily PH domain-like 3.7e-20
HMMSmart BSD 0.00000000025
HMMSmart BSD 0.0000000000018
ProfileScan BSD 10.213
ProfileScan BSD 14.278
HMMPanther UNCHARACTERIZED 5.4e-298
HMMPanther Kelch related 5.4e-298

See the detailed result >

AT1G55750.1

Model type
Protein coding
Short Description
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
Computational Description
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (TAIR:AT3G61420.1); Has 363 Blast hits to 357 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 134; Plants - 65; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-88-F16 introduced

  • F07311 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::abnormal / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed / fruit::decreased length / fruit::increased thickness / stem internode::decreased length
  • F19008 - rosette leaf::dark green / sporophyte vegetative stage::decreased speed / fruit::decreased length

Mutant lines with disrupted or induced

6 mutant lines found