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  3. RAFL06-88-F16

RAFL06-88-F16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17269)

full reading [+] show sequence

Nucleotide sequence: RAFL06-88-F16 - full reading
CCCGGAATTG ATCGACTGGA AAACAGAGAA CCACCGTTTC TACAGTTGGA 
TATGGCTGGT GGGCAAATAG AGAAGCTAGT CAAATACAAG AGCACTGTCA
AGGATCCAGG AACTCCTGGA TTTCTCAGAA TTAGAGAAGG GATGTTGCTC
TTCGTCCCTA ATGATCCCAA ATCAGATTCT AAGCTCAAAG TACTTACTCA
GAACATCAAA AGTCAAAAAT ATACCAAAGA AGGATCAAAT AAACCTCCTT
GGCTCAATCT CACCAACAAG CAGGCAAAGA GTCATATCTT TGAGTTTGAA
AATTATCCCG ACATGCATGC TTGCCGTGAT TTCATCACTA AGGCCCTTGC
TAAATGTGAA TTGGAGCCTA ATAAATCCGT TGTCTCGACA TCTTCCGAGC
AACTCAGTAT TAAGGAATTG GAGCTGCGCT TCAAGCTTCT GAGAGAAAAT
AGTGAGCTGC AGAGATTGCA TAAGCAATTT GTGGAAAGTA AAGTACTGAC
TGAAGATGAA TTCTGGGCTA CAAGAAAGAA ATTACTTGGT AAAGATTCCA
TCAGAAAGTC AAAACAGCAG CTCGGGCTTA AGAGCATGAT GGTTTCTGGC
ATCAAACCAT CTACTGATGG GCGGACTAAT AGAGTGACGT TTAACTTGAC
ACCTGAGATA ATTTTTCAGA TTTTTGCTGA GAAGCCAGCT GTTCGGCAGG
CATTCATCAA TTATGTTCCG AGTAAGATGA CAGAAAAAGA CTTCTGGACA
AAATATTTTA GAGCAGAATA TCTTTACAGC ACCAAAAATA CAGCAGTAGC
TGCAGCAGAA GCTGCTGAGG ACGAGGAACT CGCTGTCTTT CTGAAGCCTG
ATGAGATATT GGCTCGGGAA ACTCGTCACA AGATTAGACG GGTTGATCCA
ACTCTTGACA TGGAGGCTGA CCAGGGAGAC GACTACACTC ATCTTATGGA
CCACGGGATC CAGCGTGATG GCACCATGGA TGTTGTTGAA CCACAAAATG
ATCAGTTTAA ACGATCACTT TTGCAAGATC TTAATCGTCA TGCTGCTGTT
GTATTGGAAG GCAGAAGCAT TGATGTTGAG TCAGAAGATA CAAGGATTGT
TGCAGAGGCT CTCACACGGG TTAAACAAGT AAGCAAAGCT GATGGTGAAA
CCACCAAGGA CGCTAATCAG GAGAGATTGG AAAGAATGTC CCGGGTAGCA
GGAATGGAGG ATCTTCAAGC ACCACAAAAT TTCCCATTGG CGCCGCTTTC
TATCAAGGAT CCTCGTGATT ACTTTGAATC TCAACAAGGA AACGTCCTCA
ATGTACCCAG AGGAGCAAAG GGCTTGAAGA GAAATGTCCA TGAAGCTTAT
GGATTACTAA AGGAATCCAT TTTAGAGATT AGAGCTACAG GATTAAGTGA
TCCGTTGATT AAGCCTGAAG TTTCTTTCGA GGTTTTCAGT TCGTTAACCC
GAACCATTGC AACTGCTAAA AATATTAATG GGAAGAACCC ACGAGAGAGC
TTTCTGGACA GATTACCAAA GTCCACTAAG GATGAAGTTC TACACCATTG
GACATCAATA CAAGAATTAC TGAAACATTT TTGGTCATCT TATCCGATAA
CAACCACATA TCTTCATACC AAGGTTGGTA AACTGAAGGA TGCAATGTCC
AATACATATT CAAAACTTGA GGCAATGAAA GAGTCGGTGC AATCTGATCT
CCGGCATCAG GTTTCTCTAC TGGTTCGTCC AATGCAACAG GCTCTTGACG
CTGCGTTCCA TCACTACGAA GTGGATCTGC AGAGAAGAAC AGCTAAGAGC
GGCGAAAGAC CAAACGGCTA CGTATAGAGG ACAAAAAAAC TAAAACTAAA
AAGCTTTGCA AGATCTTTGA ATTGTTTCAT CAGCCTTGGT TGGTGTTTTT
GAAAATCTTC ATTTGTCCCT TTTTGTCCGA CCATTGAGAT ACAAAAATGC
GTTTATATTG TAGTAATATT TTCTTTTCTT TTTTTTGTTA ATTAGGCGTT
ATATTGTTAA CTGCGAGAGA CAACAAAGAG ATTTTCTCGA TCTGAACATT
TTTAAGTTTG CAATGTATTA GTAAATTCTC TAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G55750.1 [+] show detail - BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam BSD 2.5e-09
HMMPfam BSD 1.7e-13
superfamily PH domain-like 3.7e-20
HMMSmart BSD 2.5e-10
HMMSmart BSD 1.8e-12
ProfileScan BSD 10.213
ProfileScan BSD 14.278
HMMPanther UNCHARACTERIZED 5.4e-298
HMMPanther Kelch related 5.4e-298

See the detailed result >

AT1G55750.1

Model type
Protein coding
Short Description
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
Computational Description
BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (TAIR:AT3G61420.1); Has 363 Blast hits to 357 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 134; Plants - 65; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-88-F16 introduced

  • F07311 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::abnormal / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed / fruit::decreased length / fruit::increased thickness / stem internode::decreased length
  • F19008 - rosette leaf::dark green / sporophyte vegetative stage::decreased speed / fruit::decreased length

Mutant lines with disrupted or induced

6 mutant lines found