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RAFL06-88-O07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07776)

full reading [+] show sequence

Nucleotide sequence: RAFL06-88-O07 - full reading 
ACAAAGAGAA AAACATTGGA ACAATTAAAA GAAACAAAAA TTTCCAAATT 
GATTCTTGTG TTTTCTACAT AAACAAGAAC CAATGACAGA TATTTTCACT 
TTCTTTACGA TCCAAAATCG TAATGACCAC TTCGACTTTG TTTTAGCTAC 
AATAGTCATA TCCTCTGTTT TTTGGTATAT ATGGGTTTAC GTCAAATCGA 
AACGACTGTT TCCACCGTTA CCACCGGGAC CTCGGGGTCT TCCCATCGTC 
GGAAACCTCC CATTCCTCCA CCCGGAGCTT CACACCTACT TTCACAGTCT 
AGCTCAAAAA CACGGACCCG TTTTCAAACT ATGGCTCGGC GCAAAACTAA 
CCATCGTGAT AACCTCTTCC GAAGCAACGC GGGATATTCT AAGAACTAAT 
GACGTCATCT TTGCGAACGA CGACGTTCCC GTCGCAGGCT CACTCAGCAC 
GTATGGTGGC GTAGACATTG TCTGGTCACC GTACGGACCA GAATGGCCAA 
TGCTAAGAAA AATCTGCATT AACAAAATGT TAAGCAACGC CACGTTGGAT 
TCAAATTCTT TTAGTGCACT TCGCCGCCAG GAGACCAGGC GAACAGTCCG 
GTATTTGGCA GACCGGGCTC GGGCCGGGTT GGCGGTTAAC GTTGGAGAAC 
AAATATTTGT CACGATATTA AATGTGGTGA CTCAGATGTT GTGGGGAGAA 
ACTGTTGCGG ACGACGAGGA GAGAGAGAAA GTTGGAGCTG AATTTTTGGA 
ATTGATTACG GAAATAATTG ATGTTGTGGG AAAGCCAAAT GTCTCTGATT 
TTTTCCCGGT TTTGAGCCGG TTTGACCTTC AGGGTTTGGC TAAGCGTGTG 
CGTAGATCGG CTCAGAGGAT GGACCGGATG TTCGACCGGA TTATAAGTCA 
ACGGATGGGA ATGGATAAGG GAAGTAAAGG GAACGGTGGA GATTTTTTGA 
TGGTTTTGTT GAATGCTAAG GATGAAGATG AAAACATGTC CATGAACCAT 
GTCAAGGCCT TGCTAATGGA TATGGTGCTT GGTGGTACAG ACACATCTTT 
GAACACAATA GAGTTCGCAA TGGCAGAGCT TATAAACAAA CTGGAGATCA 
TGAAGAGAGC TCAACAAGAG CTTGACAAGG TTGTGGGGAA AAACAACATC 
GTCGAAGAAA AACATATCAC TAAACTTCCA TACATTCTCT CCATTATGAA 
AGAAACCCTA AGGCTTCACC CAGCTCTTCC TCTTCTAATA CCTCGCTGCC 
CATCTGAAAC CACGGTTATA GGTGGCTACA CAATTCCTAA TGATTCTAAG 
GTTTTCATCA ATGTGTGGGC GATTCATAGA AATCCGAACG TATGGGAGAA 
TCCGTTGGAG TTTAATCCTG ATAGGTTTCT TGATAAAGGT TACGACTTTA 
GTGGTAATGA CTATAGTTAT TTCCCGTTTG GATCTGGCCG GAGAATTTGT 
GCGGGAATGG CCATGGCCGA GAAAGTTGTT CTTTACAATC TTGCAACGCT 
TTTGCATTCT TTTGATTGGA GAATTGGGGA AGGAGAGAAA GTGGAGCTCG 
AGGAGAAGTT TGGGATTTTA TTGAAGTTGA AGAATCCACT TGTTGCAACA 
CCCGTGCTAA GATTGTCGGA TCCAAACCTT TTTCTTTAAC AGTTTAAGTG 
AAAGGAGAAA AGTAATTGCT CTTTTTGTTT ATGTGAACTT ATATAATGTT 
CAATGTGACG GTGTCTTATC TAATGCCGTA TTATGTATTG TTACATATAT 
GATGATTCCA CCTATATTTT AGTACTATGC ATGATGTAAT ATGTGTTTTA 
GACATGGTCG CATGGACTAT ATATGTCCAC ATATCCAAAT CCAAGTGATT 
TCAT

Gene models with high sequence identity

  1. AT4G12330.1 [+] show detail - cytochrome P450, family 706, subfamily A, polypeptide 7
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
superfamily Cytochrome P450 5.4e-126
HMMPfam Cytochrome P450 5.3e-98
Coil coiled-coil 0
PatternScan Cytochrome P450, conserved site 0
HMMPanther FLAVONOID 3-HYDROXYLASE 1.9e-277
HMMPanther Cytochrome P450 1.9e-277
Gene3D Cytochrome P450 1.8e-121
FPrintScan Cytochrome P450, E-class, group I 4.2e-44
FPrintScan Cytochrome P450, E-class, group I 4.2e-44
FPrintScan Cytochrome P450, E-class, group I 4.2e-44
FPrintScan Cytochrome P450, E-class, group I 4.2e-44
FPrintScan Cytochrome P450, E-class, group I 4.2e-44
FPrintScan Cytochrome P450, E-class, group I 4.2e-44
FPrintScan Cytochrome P450, E-class, group I 4.2e-44
FPrintScan Cytochrome P450, E-class, group I 4.2e-44
FPrintScan Cytochrome P450, C-terminal 2.6e-09
FPrintScan Cytochrome P450, C-terminal 2.6e-09
FPrintScan Cytochrome P450, C-terminal 2.6e-09
FPrintScan Cytochrome P450, C-terminal 2.6e-09

See the detailed result >

AT4G12330.1

Model type
Protein coding
Short Description
cytochrome P450, family 706, subfamily A, polypeptide 7
Curator Summary
member of CYP706A
Computational Description
"cytochrome P450, family 706, subfamily A, polypeptide 7" (CYP706A7); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 3 (TAIR:AT5G44620.1); Has 32880 Blast hits to 32631 proteins in 1648 species: Archae - 51; Bacteria - 3420; Metazoa - 11813; Fungi - 6994; Plants - 9311; Viruses - 3; Other Eukaryotes - 1288 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-88-O07 introduced

  • F07701 - Specific phenotypes were NOT observed.
  • F13409 - Specific phenotypes were NOT observed.
  • F26912 - stem::abnormal / fruit::decreased length / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

4 mutant lines found