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RAFL06-88-P09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17271)

full reading [+] show sequence

Nucleotide sequence: RAFL06-88-P09 - full reading 
GATAGACAAC TCAAGTTTCT TGCAATTACC TACTTACAAC AAAGCAACTC 
GACTCGAACA AACACATCCA TGGCTCCTTC TGCGCAACCT CTTCCTGTGA 
GTGTTTCGGA TGAAAAATAT GCGAATGTCA AGTGGGAAGA GTTGGCATTC 
AAGTTTGTTC GTACGGATTA TATGTATGTT GCGAAGTGCA ATCATGGAGA 
GAGTTTTCAA GAGGGGAAGA TTCTTCCTTT TGCTGATTTG CAACTTAACC 
CTTGCGCTGC TGTTCTTCAG TATGGCCAGG GTTTATATGA AGGACTGAAA 
GCTTACAGGA CAGAAGATGG TCGGATTCTG CTATTCCGAC CAGACCAAAA 
CGGTCTCCGC CTTCAAGCCG GAGCTGACAG ACTCTATATG CCTTATCCTT 
CGGTCGATCA ATTCGTCTCC GCCATCAAAC AAGTTGCTCT TGCCAACAAG 
AAATGGATTC CTCCTCCGGG GAAAGGAACA TTGTATATTA GGCCTATCTT 
GTTTGGGAGT GGTCCGATTC TTGGTTCATT TCCCATTCCT GAGACCACCT 
TCACAGCTTT TGCCTGTCCT GTTGGACGTT ATCATAAGGA TAACTCTGGT 
TTGAATCTGA AAATCGAAGA TCAGTTTCGT CGAGCTTTTC CTAGTGGAAC 
TGGTGGTGTG AAGAGCATCA CAAACTATTG TCCTGTTTGG ATACCATTGG 
CAGAGGCGAA AAAACAAGGT TTCTCTGATA TTTTGTTTTT GGATGCTGCA 
ACTGGCAAAA ACATTGAAGA ACTTTTCGCA GCTAATGTTT TTATGCTCAA 
GGGCAATGTT GTATCGACAC CAACAATTGC AGGAACTATT TTGCCCGGAG 
TCACTCGAAA CTGCGTAATG GAATTGTGTC GTGATTTCGG CTACCAGGTC 
GAGGAACGTA CGATTCCTCT AGTGGACTTT CTCGATGCGG ACGAAGCTTT 
CTGTACTGGC ACTGCTTCCA TTGTGACTAG TATTGCATCC GTAACCTTTA 
AAGACAAAAA GACCGGATTC AAAACAGGGG AAGAAACATT GGCTGCGAAG 
CTATACGAGA CGTTAAGTGA TATCCAGACG GGTCGGGTCG AGGATACCAA 
GGGATGGACG GTGGAGATTG ACCGCCAGGG CTGAAAGTTG AAACTGTAAC 
TTGATGCTAA ATATGTGTGT GTGTGTATAC AAAACTTATG TAAGAAACAT 
CTGAAGATGT CTCTGATCTT TGTGATTGTG ATGATCATGC ATGTCCTATC 
GTTGCGATGT ATTTTATAAA TGTTCGTCTG TAAGTTATTT AATAACTATG 
GCTTTTTGCT TTATCTTTTT AATTATTTTT AAAGAGTAAA GAAAAAA

Gene models with high sequence identity

  1. AT3G19710.1 [+] show detail - branched-chain aminotransferase4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Branched-chain amino acid aminotransferase II 3.3e-95
HMMPfam Aminotransferase, class IV 9.5e-27
Gene3D no description 8.1e-50
Gene3D no description 8.9e-46
superfamily Aminotransferase, class IV 9.5e-102
HMMPIR Branched-chain amino acid aminotransferase II 5.2e-124
HMMPanther Branched-chain amino acid aminotransferase II 1.9e-156
HMMPanther Aminotransferase, class IV 1.9e-156

See the detailed result >

AT3G19710.1

Model type
Protein coding
Short Description
branched-chain aminotransferase4
Curator Summary
Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.
Computational Description
branched-chain aminotransferase4 (BCAT4); CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT1G50110.1); Has 11097 Blast hits to 11097 proteins in 2502 species: Archae - 154; Bacteria - 6834; Metazoa - 263; Fungi - 399; Plants - 250; Viruses - 0; Other Eukaryotes - 3197 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-88-P09 introduced

  • F05628 - Specific phenotypes were NOT observed.
  • F07416 - Specific phenotypes were NOT observed.
  • F09324 - Specific phenotypes were NOT observed.
  • F09940 - Specific phenotypes were NOT observed.
  • F28946 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found