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RAFL06-89-E01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07784)

full reading [+] show sequence

Nucleotide sequence: RAFL06-89-E01 - full reading 
GTGAATGCGT CATTGAAACG CCATTATCCG CCGTGCTAAT CTGAATCTCC 
TCCCCCGTCG GAAAAAATGG CCACTGGTGG AAAAGTCTCC TTCAAAGTCA 
CTCTGACTTC GGATCCTAAG CTTCCTTTCA AAGTTTTCAG CGTACCAGAA 
GGAGCTCCGT TCACGGCGGT TCTGAAATTC GCAGCAGAAG AGTTCAAGGT 
TCCTCCACAA ACCAGCGCCA TCATCACTAA TGATGGGATC GGGATCAATC 
CTCAACAGAG TGCAGGAAAC GTTTTTCTGA AGCACGGATC TGAACTAAGA 
TTGATCCCGC GTGATAGAGT TGGAGCTGTG TTTGTGATGG ATCCATAGAT 
GATGTGTAAG CAATGATTAA AAACTCAGTT CCAAAAAAAA ACATAATAAT 
ATACTGAAAT GCTTATGTAC AACTTCGTTG AATAAATATG TAATCGTCAC 
AATTGAAGTG AGTTGAATTT GGTCAAGTTA TATGTCTGTT ATAATTCATA 
TTT

Gene models with high sequence identity

  1. AT1G77710.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 ...
    E-value: 0; Score: 99.80

 

InterPro Scan Digest

Program Description E-value
superfamily Ubiquitin-like 2.9e-39
Gene3D no description 6.6e-42
HMMPIR Ubiquitin-like, Ufm1 2.3e-59
HMMPfam Ubiquitin-like, Ufm1 2.1e-52

See the detailed result >

AT1G77710.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-89-E01 introduced

  • F05335 - Specific phenotypes were NOT observed.
  • F05338 - Specific phenotypes were NOT observed.
  • F05608 - seed::decreased width
  • F18316 - Specific phenotypes were NOT observed.
  • F18524 - Specific phenotypes were NOT observed.
  • F23417 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found