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RAFL06-89-E02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17274)

full reading [+] show sequence

Nucleotide sequence: RAFL06-89-E02 - full reading 
CCCCCGAAAA CATTCCCTTA AAAACCTGAA GAGGATCCAA CAAGAACAAT 
CTCTAATGGC GGTTTTTCAA AGGTTTAACA ATTTTTTTCC AAATCCGAAA 
AAATCTCTTA ACAAAAAAAC TCCTTAATCT TCGTCATCTT TTTGTCTCTT 
TTTAAAAAAT AATTAAACCC CACTTGATGA TTATCCCATT AATCATTTAA 
AGGTTTTTTT TTTTCTTTTT GTTCAACGAA TCTCTATCTC TCTCTAGATT 
TTGGGGATTT TGCTCTCTCT CCCTCTCTGT CTCTCTTTGG TGCTCGTAGC 
TTTCTGTCTC CCAATTGAGA GAAGGAGGGA GATAGAAACG TCGATGGGCT 
TAATTGTGGA TGATGATAAC GATGGAGAAG TTTTGATTCC GCCGCCGAAT 
TTTTCAATGG TAGAAGATGA AATTTACCGA TCTGGGTTTC CTGAGCTGGA 
GAATTTCGGA TTCTTATCAA CCCTAAATCT TCGATCCATC ATGTAAGATT 
CTCTTCTTTC ATTCTTCTGA ATCTTTTGTT AAAAATTAAA AAAAGAAGAA 
GAATCTTTTA TTTAATAACG CATCGTTGTC GTTGTTTATA GATAGACAGA 
TTCCTTAAAT CACCACTTTC ACTTTCATGG CTTTTATTAG TTAAATGTCA 
AAAAAATGTG GGATAATTAT ATATTTGTGT TGTTGAAATT TGACCCACGC 
AGAAAGATTT GATTACAAAA ACGAGTTTTG TTTGTTGGGT TTGTCTGGAA 
ACAGTTATCT GTGTCCTGAG CCATACCCTG AGGACAATCT CAAGTCTCTT 
GCATCCAACA ACATTAAGCT TTTCCAGTTC GGGATTGAAG GCAAAACGGT 
ATGATTTTCT AACCTTTATG ATTCATTCAA CAACAGCAAT TGTATTGAAT 
CTTTTTGAGT TCTTCTTCAA GAACATTTGA CCCTGTTTTT AGTGTCTTGT 
TGGCTTGTAG CATTTGAGTT GATGAATCTT ATAAGACCTT TAAGAAACAT 
ATAAATACCC TGTTCTGTTC CTGTTATAGC TTCTTTGATT TCTGAGTTTG 
GATTGTTTTA CTTTTACGCC AATAGGATCC TCCAACTCCT ATGCCAAAGG 
ATACAGTGTT GAGTGCTCTT AGAGTACTAG TTGGTAAGGA ACCAGAAGAG 
ACTCTTTGAT GTGTTGTCGG CTTTTCTCTT TTAGCTGTCT CATTAATTCT 
TCTGTTTTTG CTAACAGATG TTCGAAATCA TCCAATTCTT ATCCACTGTA 
AGCGCGGAAA GGTAACCAAA CCAAACCCTT CTCTTCCGGT TTAACAAGCT 
TTAGGTTAAG TTAAGAGTGA TTTGAGTCCA ATGGTGCGTT TCTTCTGGCT 
CATTGCAGCA TAGGACAGGT TGTCTTGTGG GATGCTTGAG GAAAGTGCAG 
AACTGGTGCT TGTCATCGGT TCTCGAGGAA TACCAGAAGT GTGCGGGTTT 
GAAATGGAGA CAAAGAGATT TAAGGTTCAT TGAGGATTTC GATGTGCTCA 
GATTGAAGCA ATGTCTATAC AGCATCATAT ATCAGTACAA TGGGTATGGT 
CTCAAGAGAA GAAAGTTGCT GTATCAAGAA GAGAATGTTG TTCAAGAACA 
GCAAAAACCT CAAGCCACCA AAGGATAAAG AAAGAGATTT GAAATCGGAT 
TTTTTTTTGT TTCTTTACAT TTTGTCGTGA TGATGATGAT GATTTTTTTG 
AGAATAGGAT AGTTCTTTAA AAAGCTTGAG AAAACAGAGG ATTTGATTTG 
GTCTCTCTCT ATCTTTTTTT TACGGTTAGA GAAATTTACA GATTGATTCT 
TAATTGTTCA TAAGAAACTA ACATGTGTGA TGTGAGCTTT TGTTTTCCTA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT5G16480.1 [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 8.5e-09
FPrintScan Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic 8.5e-09
Gene3D no description 3.6e-09
Gene3D no description 4.1e-11
HMMPfam Protein-tyrosine phosphatase, SIW14-like 8.7e-11
HMMPfam Protein-tyrosine phosphatase, SIW14-like 1.6e-14

See the detailed result >

AT5G16480.1

Model type
Protein coding
Short Description
Phosphotyrosine protein phosphatases superfamily protein
Computational Description
Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Tyrosine phosphatase family protein (TAIR:AT3G02800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-89-E02 introduced

  • F06420 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found