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  3. RAFL06-89-E03

RAFL06-89-E03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07785)

full reading [+] show sequence

Nucleotide sequence: RAFL06-89-E03 - full reading 
ACTTCCTTCG TTCTTTTCCT TACCAAAAGA TCCACCTCGA ACCTCTCTCC 
TCCGTCTTCC TCCGCAGCCG CCGTCACTAT CACCGCAGCT AGAATGAGAG 
AAGATAATCC AAATTGGTTC CTTAGATGGG AAGAAGAGCT TCCATCTCCA 
GAAGAACTCA TCCCTATCTC TCAAACCTTA ATCACTCCTC ATCTAGCTCT 
CGCTTTCCAA ATCGGAAGTC CTAATCATCA TCTCGGATCA AAGAGAACCA 
CCGCGATTTA TCACCAGAAG CTTCAATCCT CCACCACTCC AACAACTCCA 
ACTCCAACTC CTCCACCGAT GATGATGAAT TCTGATTTCG GCGGTGGCGA 
TTCCACGGAT CTTGGTTCAG GATCAATAGG AGGAGAGCCA GCAAGAACGT 
TGAAACGGCC GCGTCTAGTG TGGACGCCTC AGCTACACAA ACGTTTCGTG 
GATGCGGTTG GACACTTAGG GATCAAAAAC GCAGTTCCAA AGACTATAAT 
GCAGCTTATG AGCGTTGAAG GATTGACTAG AGAGAACGTT GCGAGTCATC 
TTCAGAAATA TCGTCTTTAC CTTAGGAGAA TGCAAGGCGG GAACGGTAAC 
GGAATCACTG GAGGACACGT CATCGTCTCT GATTCGGCTA CTGATCGGCT 
ATTTGCTAGC TCACCGGTTC CAGCTCATTT CTTGAGCCCG GATTACTTGA 
TGCCGCCATT AGAGCATTCG TATATGGGGA AACATGTGAT TACGCAGCAA 
AACCAAGTGG TTCGTAATCT GAGGTATGAA GATTCGGAAT ATGGTCATGG 
TAGTATGAAG ATGCTTAAGC TCTTCCCTGC CGGAAATTAA TGAAATATTT 
GAATTCTTAA CTTCATTTTT ATGGAAGTAA TAATGTTTAA GGTATGTGGA 
TTATCTCTGT AATTTGCATT TGTCGTCAGG ATCAATAAT

Gene models with high sequence identity

  1. AT2G40970.1 [+] show detail - Homeodomain-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Homeodomain-like 1.2e-20
HMMPfam Myb, DNA-binding 1.6e-12
Gene3D Homeodomain-related 2.4e-23
ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 9.19
HMMTigr Myb-like DNA-binding domain, SHAQKYF class 5.8e-28

See the detailed result >

AT2G40970.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
MYBC1; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10760.1); Has 1641 Blast hits to 1639 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1614; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-89-E03 introduced

  • F04411 - Specific phenotypes were NOT observed.
  • F16617 - Specific phenotypes were NOT observed.
  • F26943 - rosette leaf::abnormal / stem::abnormal / cauline leaf::abnormal / whole plant::increased height
  • F28934 - Specific phenotypes were NOT observed.
  • F30145 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found