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  3. RAFL06-89-E09

RAFL06-89-E09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17275)

full reading [+] show sequence

Nucleotide sequence: RAFL06-89-E09 - full reading 
CGATAGGAGT CATGTGTTTC TTCTTGTCTT CCTAGCTTCT TCTAATAAAG 
TCCTTCTCTT GTGAAAATCT CTCGAATTTT CATTTTTGTT CCATTGGAGC 
TATCTTATAG ATCACAACCA GAGAAAAAGA TCAAATCTTT ACCGTTAATG 
GAGGAAGTAT CTCCGGCGAT CGCAGGTCCT TTCAGGCCAT TCTCCGAAAC 
CCAGATGGAT TTCACCGGGA TCAGATTGGG TAAAGGTTAC TGCAATAACC 
AATACTCAAA TCAAGATTCC GAGAACGGAG ATCTAATGGT TTCGTTACCG 
GAGACTTCAT CATGCTCTGT TTCTGGGTCA CATGGTTCTG AATCTAGGAA 
AGTTTTGATT TCTCGGATCA ATTCTCCTAA TTTAAACATG AAGGAATCAG 
CAGCTGCTGA TATAGTCGTC GTTGATATCT CCGCCGGAGA TGAGATCAAC 
GGCTCAGATA TTACTAGCGA GAAGAAGATG ATCAGCAGAA CAGAGAGTAG 
GAGTTTGTTT GAATTCAAGA GTGTGCCTTT GTATGGTTTT ACTTCGATTT 
GTGGAAGAAG ACCTGAGATG GAAGATGCTG TTTCGACTAT ACCAAGATTC 
CTTCAATCTT CCTCTGGTTC GATGTTAGAT GGTCGGTTTG ATCCTCAATC 
CGCCGCTCAT TTCTTCGGTG TTTACGACGG CCATGGCGGT TCTCAGGTAG 
CGAACTATTG TAGAGAGAGG ATGCATTTGG CTTTGGCGGA GGAGATAGCT 
AAGGAGAAAC CGATGCTCTG CGATGGTGAT ACGTGGCTGG AGAAGTGGAA 
GAAAGCTCTT TTCAACTCGT TCCTGAGAGT TGACTCGGAG ATTGAGTCAG 
TTGCGCCGGA GACGGTTGGG TCAACGTCGG TGGTTGCCGT TGTTTTCCCG 
TCTCACATCT TCGTCGCTAA CTGCGGTGAC TCTAGAGCCG TTCTTTGCCG 
CGGCAAAACT GCACTTCCAT TATCCGTTGA CCATAAACCG GATAGAGAAG 
ATGAAGCTGC GAGGATTGAA GCCGCAGGAG GGAAAGTGAT TCAGTGGAAT 
GGAGCTCGTG TTTTCGGTGT TCTCGCCATG TCGAGATCCA TTGGCGATAG 
ATACTTGAAA CCATCCATCA TTCCTGATCC GGAAGTGACG GCTGTGAAGA 
GAGTAAAAGA AGATGATTGT CTGATTTTGG CGAGTGACGG GGTTTGGGAT 
GTAATGACGG ATGAAGAAGC GTGTGAGATG GCAAGGAAGC GGATTCTCTT 
GTGGCACAAG AAAAACGCGG TGGCTGGGGA TGCATCGTTG CTCGCGGATG 
AGCGGAGAAA GGAAGGGAAA GATCCTGCGG CGATGTCCGC GGCTGAGTAT 
TTGTCAAAGC TGGCGATACA GAGAGGAAGC AAAGACAACA TAAGTGTGGT 
GGTGGTTGAT TTGAAGCCTC GGAGGAAACT CAAGAGCAAA CCCTTGAACT 
GAGGCAGAGA GGGTCCTTTT TCTTAATTTT TAAAATGAAT ATGGGTCTCT 
CCAAGAAAAA GTATTTACTA TTATTAATTT GTGCTTATTT TTTTAACTAA 
CAAGTTATAA CCATATGGAG ATAATGAAGC TTAATGTGTT AAGCTCTTTT 
GTCTTGACTA CATTCTAAAA AGCCCCTTGT ATTTTTCTTC CCGGGCTAAT 
TGTAATATGG TTACAACATA CATTAAGATG TAGTATTATT GTTTATGCGA 
AAAAAAAAA

Gene models with high sequence identity

  1. AT4G26080.1 [+] show detail - Protein phosphatase 2C family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Protein phosphatase 2C-related 8.6e-78
HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 7.4e-154
HMMPanther Protein phosphatase 2C 7.4e-154
HMMSmart Protein phosphatase 2C-related 1.4e-114
HMMPfam Protein phosphatase 2C, N-terminal 8.2e-75
PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
Gene3D Protein phosphatase 2C-related 9.1e-76

See the detailed result >

AT4G26080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Curator Summary
Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure.
Computational Description
ABA INSENSITIVE 1 (ABI1); CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G57050.1); Has 6864 Blast hits to 6731 proteins in 444 species: Archae - 4; Bacteria - 295; Metazoa - 1756; Fungi - 772; Plants - 2717; Viruses - 7; Other Eukaryotes - 1313 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-89-E09 introduced

  • F06230 - seed::increased size
  • F11529 - Specific phenotypes were NOT observed.
  • F14632 - Specific phenotypes were NOT observed.
  • F15008 - Specific phenotypes were NOT observed.
  • F16734 - rosette leaf::decreased width / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / stem::decreased thickness / flower::abnormal
  • F16814 - Specific phenotypes were NOT observed.
  • F18147 - Specific phenotypes were NOT observed.
  • F19322 - rosette leaf::abnormal / cauline leaf::decreased size / stem::abnormal / cauline leaf::abnormal / sporophyte vegetative stage::decreased speed / rosette leaf::abnormal / rosette leaf::abnormal / cauline leaf::decreased size
  • F22906 - Specific phenotypes were NOT observed.
  • F23521 - Specific phenotypes were NOT observed.
  • F24301 - Specific phenotypes were NOT observed.
  • F24624 - Specific phenotypes were NOT observed.
  • F25245 - seed::increased length
  • F25839 - Specific phenotypes were NOT observed.
  • F26705 - rosette leaf::dark green / rosette leaf::dark green / stem::present in fewer numbers in organism
  • F28844 - rosette leaf::epinastic / cauline leaf::abnormal / stem::abnormal

Mutant lines with disrupted or induced

17 mutant lines found