1. Home
  2. Full-length cDNAs
  3. RAFL06-89-E13

RAFL06-89-E13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09464)

full reading [+] show sequence

Nucleotide sequence: RAFL06-89-E13 - full reading 
CCCGACAACA ACAACCACTT CTCTTCCATT CCACAAGGAC CACAATCACT 
TCAACCTTAA TCGAAATCTC CGATCGAGAA ATAGGAGAAT GACGACGCCT 
CCAGTTCTAT CTCTCGCTCT TCCTTCAGAT ACTGGTCGTG TTCTTAGTAT 
CCAATCCCAC ACTGTTCAGG GATATGTTGG TAACAAATCA GCTGTCTTTC 
CTCTTCAATT GTTGGGGTAT GATGTGGATC CAATCAACTC TGTACAATTC 
TCGAATCATA CAGGGTATCC TACATTTAAA GGACAGGTTT TGAATGGTCA 
GCAATTGTGT GATTTGATTG AAGGTCTTGA AGCAAACGAT TTGTTGTTCT 
ACACTCATGT ATTAACAGGT TATATTGGAT CAGTGTCATT CCTGGATACA 
ATTTTGGAGG TTATTAATAA GCTTCGCTCT GTAAACCCGA ATCTTACATA 
TGTATGTGAT CCGGTGATGG GTGATGAAGG AAAGTTGTAT GTGCCTGAAG 
AACTGGTACA TGTTTATCGT GAAAAGGTTG TTCCCTTGGC TTCTATGTTG 
ACTCCTAACC AGTTTGAGGC AGAGAAGTTA ACAGGACTAA GGATAAATTC 
TGAGGAAGAT GGCAGGGAAG CTTGTGCTAT TCTTCATGCA GCTGGTCCTT 
CAAAGGTTGT GATCACTAGC ATTACTATAG GAGGCATTCT ATTACTTATC 
GGAAGCCATC AGAAAGAAAA GGGTCTCAAG CCTGAGCAAT TCAAGATTTT 
GATACACAAA ATCCCTGCTT ATTTTACGGG AACAGGAGAT CTCATGACTG 
CTCTTCTACT TGGTTGGAGT AATAAATACC CTGACAACCT TGACAAAGCA 
GCCGAGCTTG CAGTTTCAAC GTTGCAGGCG CTTTTGCGAA GGACGCTTGA 
TGATTACAAA CGAGCTGGGT ATGATCCTAC CTCAAGCAGT TTGGAGATTA 
GATTGATACA AAGCCAGGAA GACATTCGCA ACCCGAAGGT CGAACTGAAA 
GCTGAAAGAT ACAGCTGAAG CAGGTGAAAA AATGTAACAT ATTTATCTGA 
AATAAGAAAA CATAGATGAT TTTGGGGATA CAATAATTAT GTTGCACGAT 
TCTTTTATGC ATATAAAAGA GTACAGACTT CAGAG

Gene models with high sequence identity

  1. AT5G37850.1 [+] show detail - pfkB-like carbohydrate kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase 6.3e-75
superfamily Ribokinase-like 2e-69
HMMPfam Phosphomethylpyrimidine kinase type-1 0.000000000000004
HMMPanther PYRIDOXINE KINASE 1.5e-123
Gene3D no description 2.6e-84

See the detailed result >

AT5G37850.1

Model type
Protein coding
Short Description
pfkB-like carbohydrate kinase family protein
Curator Summary
Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.
Computational Description
SALT OVERLY SENSITIVE 4 (SOS4); FUNCTIONS IN: pyridoxal kinase activity, kinase activity; INVOLVED IN: pyridoxine biosynthetic process, hyperosmotic salinity response, trichoblast differentiation, pyridoxal 5'-phosphate salvage; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase (InterPro:IPR004625), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); BEST Arabidopsis thaliana protein match is: thiamin biosynthesis protein, putative (TAIR:AT1G22940.1); Has 6182 Blast hits to 6179 proteins in 1931 species: Archae - 81; Bacteria - 5137; Metazoa - 195; Fungi - 190; Plants - 75; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-89-E13 introduced

  • F03537 - Specific phenotypes were NOT observed.
  • F05520 - Specific phenotypes were NOT observed.
  • F05733 - Specific phenotypes were NOT observed.
  • F15205 - rosette leaf::dark green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::epinastic / stem::present in fewer numbers in organism
  • F22643 - Specific phenotypes were NOT observed.
  • F28446 - rosette leaf::present in fewer numbers in organism / stem::present in fewer numbers in organism
  • F30518 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found