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  3. RAFL06-89-E14

RAFL06-89-E14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07786)

full reading [+] show sequence

Nucleotide sequence: RAFL06-89-E14 - full reading 
CAAAATCAGC CATGCTGATC CTCTTAGTAG CAATGGTCAT CGCATCATGT 
GCCACGGCCA TTGATATGTC CGTGGTTTCC TACGACGATA ACAACCGTCT 
CCATAGCGTT TTCGATGCTG AGGCCTCGTT AATCTTCGAG TCATGGATGG 
TCAAACATGG GAAAGTGTAC GGGTCCGTTG CCGAGAAGGA ACGGCGTTTG 
ACGATTTTTG AGGACAACCT CCGTTTTATC AATAACCGGA ACGCTGAGAA 
TCTCAGTTAT CGGCTTGGTT TGACCGGGTT TGCGGATTTA TCTCTTCATG 
AGTATAAAGA AGTTTGCCAC GGGGCTGATC CAAGACCTCC TAGGAACCAC 
GTCTTTATGA CTAGTAGCGA CCGATACAAG ACTAGTGCTG ATGATGTGCT 
TCCTAAGTCA GTTGATTGGA GAAACGAAGG AGCAGTGACT GAAGTCAAAG 
ATCAAGGCCA TTGCAGGAGT TGTTGGGCTT TCTCGACTGT GGGAGCAGTG 
GAAGGCTTAA ACAAGATCGT GACGGGAGAG TTAGTCACTT TGTCTGAGCA 
AGATTTGATC AATTGTAACA AAGAAAACAA TGGTTGCGGA GGAGGCAAAC 
TCGAGACTGC CTATGAGTTC ATCATGAAAA ATGGTGGTCT TGGTACCGAC 
AACGATTATC CTTACAAAGC TGTTAACGGA GTCTGTGATG GCCGCCTCAA 
GGAAAACAAC AAGAATGTTA TGATTGATGG GTATGAAAAT TTGCCCGCAA 
ACGACGAATC TGCTCTCATG AAAGCGGTTG CTCACCAGCC TGTGACTGCC 
GTTATCGATT CCAGTAGCCG AGAGTTTCAG CTTTATGAAT CGGGAGTGTT 
TGATGGCTCG TGTGGAACAA ACCTAAACCA TGGAGTTGTT GTGGTCGGGT 
ATGGAACTGA GAATGGTCGT GACTACTGGC TCGTGAAAAA CTCTAGGGGC 
ATTACATGGG GAGAAGCTGG CTACATGAAG ATGGCTCGAA ACATTGCCAA 
TCCAAGAGGC TTATGTGGCA TTGCAATGCG AGCTTCATAC CCTCTAAAGA 
ACTCCTTTTC TACCGATAAA AGCTCCATCG CCTAATAAAA TGAGCTAAAT 
GTATGTTATG CAAAGGATCC AGTGAGCCAG CAACCTATTC GATTGTGAAA 
TGAAAAATAA TGTAGTCGAT GGGTTTTGTT TTGTAATATA TTTTGGATTT 
GTATGGAGGG CAATGTTTGA AGTTTGTATA ATATTTATGG ATATTTCGTT 
AGGCTCTAAT TATGAATGCC TTCTTTTTAG GAA

Gene models with high sequence identity

  1. AT4G11310.1 [+] show detail - Papain family cysteine protease
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPanther CYSTEINE PROTEASE 2.2e-190
HMMPanther Peptidase C1A, papain 2.2e-190
HMMSmart Proteinase inhibitor I29, cathepsin propeptide 4.3e-23
HMMSmart Peptidase C1A, papain C-terminal 2.2e-109
HMMPfam Peptidase C1A, papain C-terminal 1.4e-75
HMMPfam Proteinase inhibitor I29, cathepsin propeptide 6.1e-15
superfamily Cysteine proteinases 1.8e-102
FPrintScan Peptidase C1A, papain C-terminal 3.3e-10
FPrintScan Peptidase C1A, papain C-terminal 3.3e-10
FPrintScan Peptidase C1A, papain C-terminal 3.3e-10
Gene3D no description 2.2e-106
PatternScan Peptidase, cysteine peptidase active site 0

See the detailed result >

AT4G11310.1

Model type
Protein coding
Short Description
Papain family cysteine protease
Curator Summary
cysteine proteinase precursor-like protein
Computational Description
Papain family cysteine protease; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein myristoylation; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT4G11320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-89-E14 introduced

  • F09433 - Specific phenotypes were NOT observed.
  • F15409 - Specific phenotypes were NOT observed.
  • F16708 - Specific phenotypes were NOT observed.
  • F22920 - Specific phenotypes were NOT observed.
  • F26008 - Specific phenotypes were NOT observed.
  • F26230 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found