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  3. RAFL06-89-N12

RAFL06-89-N12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17278)

full reading [+] show sequence

Nucleotide sequence: RAFL06-89-N12 - full reading 
GGTCAATATC AAAATGGGTA ACAATTCCTC TGCTCAAAGC TCAACACCTT 
CTTTGCCGAT TGATTCTACC TTCAATCTTC CTTCTCCATT ACCATCTTGG 
CCTTCAGGAG AAGGATTTGC GAAAGGGAGA ATCGATTTGG GAGGTCTTGA 
AGTTAGCCAA GTAGATACAT TTAACAAAGT ATGGACTGTA TACGAAGGAG 
GACAAGATAA TCTCGGAGCC ACTTTCTTTG AGCCGTCTTC AGTACCTGAA 
GGCTTTTCGA TTCTCGGGTT CTACGCTCAA CCTAATAACC GCAAGCTTTT 
CGGATGGACA CTTGTGGGAA AAGACCTCTC AGGCGACTCT TTAAGACCGC 
CGGTGGATTA TCTTCTCCTT TGGAGCGGCA AATCTACAAA GGTAGAGAAC 
AACAAGGTTG AAACAGGATA CTTTTGGCAG CCTGTACCAC CTGATGGTTA 
CAATGCAGTG GGTCTAATCG TGACAACCTC GGATGAGAAA CCTCCTCTAG 
ACAAGATCCG TTGTGTCCGT TCCGACCTGA CCGATCAATC CGAGCCTGAC 
GCTCTGATAT GGGAAACTAA TGGGTTTAGC GTTTCGAGTT CTAAACCTGT 
TAACAGAGGA ACACAAGCCT CTGGAGTCAG CGTTGGCACG TTCTTCTCAA 
ACTCTCCAAA TCCGGCCTTA CCTTGTCTGA AAAACAACAA CTTCGATTTT 
TCTTGTATGC CAAGCAAGCC CCAGATCGAC GCTCTGTTTC AAACTTACGC 
CCCTTGGATC TATTTCCACA AAGATGAGAA GTATCTCCCA TCATCTGTCA 
ACTGGTTCTT CAGCAACGGT GCCTTGCTTT ACAAGAAAGG TGATGAATCA 
AACCCAGTTC CAGTTGAACC AAACGGTTTA AACCTTCCCC AAGGTGAATT 
CAACGACGGT CTGTATTGGT TAGACCTACC TGTTGCTTCT GACGCAAGAA 
AACGAGTCCA GTGTGGTGAT TTGCAGAGCA TGGAAGTGTA TCTGCACATA 
AAACCTGTTT TCGGTGGAAC ATTCACAGAC ATAGCCGTGT GGATGTTTTA 
TCCGTTCAAC GGCCCGTCAA GAGCCAAGCT CAAAGCCGCT TCAATCCCGT 
TGGGGAGAAT CGGCGAACAC ATTGGAGACT GGGAACATTT CACTCTTCGA 
ATAAGTAACT TCAGCGGCAA GCTACATCGG ATGTATCTGT CGCAACACAG 
CGGAGGAAGC TGGGCTGATG CTTCCGAGAT CGAGTTTCAA GGCGGAGGAA 
ACAAACCAGT GGCTTACGCT TCTTTGAATG GACACGCAAT GTACTCAAAA 
CCGGGACTTG TGTTGCAAGG CAAAGACAAT GTGGGGATCA GGAACGATAC 
TGGAAAGAGT GAAAAAGTGA TTGATACGGC GGTTAGGTTC AGGGTTGTTG 
CAGCAGAGTA TATGAGAGGA GAATTGGAGG AGCCGGCTTG GTTGAATTAT 
ATGAGACATT GGGGACCAAA GATTGATTAT GGTCATGAAA ATGAGATTAG 
AGGTGTGGAG AAGATTATGG TTGGGGAGAG TCTTAAGACT ACGTTTAGGA 
GTGCGATTAA AGGATTGCCT AACGAAGTTT TTGGAGAGGA AGGACCTACT 
GGTCCGAAGT TGAAGCGGAA TTGGTTAGGT GATGAAGTTT GAATCTCTGT 
CATTTAATTA TTTTACTGTT TTTGAATCTC TTTGTTTGTA ACAGGAATTA 
ATCTTCGTTG TCACTTGACC CATATTTACA AATTTATAAT TCCTGTTATC 
CCTCGTTATT TGTTGTGACA AGAAAATAAA AGGTTCAAAA CAAAAA

Gene models with high sequence identity

  1. AT2G44230.1 [+] show detail - Plant protein of unknown function (DUF946)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PRE-MRNA PROCESSING-RELATED 0
HMMPanther PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 0
HMMPfam Protein of unknown function DUF946 2.5e-254

See the detailed result >

AT2G44230.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF946)
Computational Description
Plant protein of unknown function (DUF946); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT2G44260.1); Has 432 Blast hits to 414 proteins in 115 species: Archae - 0; Bacteria - 34; Metazoa - 43; Fungi - 133; Plants - 207; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-89-N12 introduced

  • F15027 - seed::increased size / seed::increased length
  • F20344 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found