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  3. RAFL07-07-E07

RAFL07-07-E07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03921)

full reading [+] show sequence

Nucleotide sequence: RAFL07-07-E07 - full reading 
GAACTTGTAA ACCTTACTCT CGAAGAGTCC TCTGTTACTC ATTTTTACAT 
TGTAAAAAAA AACTTCTTTT CTTCTCTACG TGAATAAGAA TCTGAAGAGT 
CATTTTCTCA AGAATGACGT GGCTAAAACA AATGTGGTCA AGCATTTTAG 
TGCTAGCCGT GGTGGTGATC GGAGCCAGAG CTGTGCCCAT CACGTATCTT 
GAATCTGCAG TGGCTAAAGG AGCTGTGTGT TTGGATGGTA GCGCGCCAGC 
ATACCATTTC GATAAGGGAT CGGGCTCAGG AGTGAACAAT TGGATCGTTC 
ATATGGAAGG AGGAGGATGG TGCACTGATA TAGCTACATG CGTTCAACGT 
AAAAGTACAA TGAAGGGTTC TTCTAAGCTT ATGAACAAAG ACTTTGGTTT 
CTCCGGTATC TTGGGTGGCA AGCAAAGCAC CAATCCAGAC TTTTACAATT 
GGAATAGAAT CAAAGTTCGG TATTGCGATG GTTCATCTTT CACCGGTGAT 
ATAGAAGCTG TTGATCCGAC GCACAAGCTG TTCTTTCGCG GTGCTAGGGT 
TTGGCGTGCG GTGATCGATG ATCTTATGGC TAAGGGAATG AGCAACGCTC 
AAAACGCTAT ACTCTCCGGT TGTTCAGCTG GAGCATTGGC TGCGATTCTA 
CATTGCGACC AGTTCAAGTC CACTCTCCCT AAAACGGCTA AGGTCAAATG 
TGTTTCTGAC GCTGGTTACT TCATCCACGG TAAGGATATC ACTGGAGGAT 
CTTACATCCA ATCCTACTAC GCCAAAGTCG TAGCGACCCA CGGATCTGCA 
AAGAGTCTAC CTGCTTCTTG CACCTCAAGT ATGAAGCCTG ATTTGTGTTT 
CTTCCCTCAA TACGTTGCTA AGACCTTACA AACACCGCTT TTCGTCATCA 
ATGCCGCCTT CGATTCTTGG CAGATCAAGA ATGTATTGGC ACCAACCTCT 
GTTGATAAAA GCAAAGCATG GAAGACTTGT AAGCTTGATC TTAAGAAGTG 
TACGGCCGCT CAGCTTCAAA CCGTTCAAGA GACCAAGTGT TGGCTGCGTT 
GGCGCCTGTT CGATCCGCGA CGACGAACGG ATTGTTCTTG GACTCGTGCC 
ATGCTCATTG CCAAGGTGGA AGCGCTGCCA CTTGGTCCGG CGACAAAGGT 
CCCACAGTCG CGAATACGAA AATGGCTAAG GCGGTTGGAG ATTGGTTCTT 
TGAGAGGAGT ACGTTTCAGA ACGTAGATTG TTCATCGCTT AATTGCAACC 
CTACTTGCCC TGCAGTATCT ACTGAAGACT AAAATTTATT CATTGATGTC 
TTAAAATTTA TTCATCTTTG GAATATTGTT CTTGAAATTT AAAAGTAAAA 
TAATATAATT GATACAATTT CATTCGAATA AATAAAATCC TTTGCCCTTC 
TACAATCGTT TAAGCTGTTA TATATAATCA ATCTCTCTTA TTATTGGGTT 
CGCAATTTCT TAAATTCTTT TTAATAAAGA ATCAATCTTA AGAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

  1. AT5G45280.1 [+] show detail - Pectinacetylesterase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Pectinacetylesterase 3.7e-36
HMMPanther NOTUM-RELATED 3.7e-36
HMMPanther Pectinacetylesterase 1.1e-209
HMMPanther NOTUM-RELATED 1.1e-209
HMMPfam PAE 2.2e-15
HMMPfam PAE 1e-126

See the detailed result >

AT5G45280.1

Model type
Protein coding
Short Description
Pectinacetylesterase family protein
Computational Description
Pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT4G19410.2); Has 552 Blast hits to 548 proteins in 96 species: Archae - 2; Bacteria - 42; Metazoa - 115; Fungi - 0; Plants - 290; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-07-E07 introduced

  • F17636 - rosette leaf::abnormal / cauline leaf::abnormal / whole plant::decreased height / stem::present in fewer numbers in organism / stem internode::decreased length

Mutant lines with disrupted or induced

3 mutant lines found