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RAFL07-07-I23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03933)

full reading [+] show sequence

Nucleotide sequence: RAFL07-07-I23 - full reading 
ATTCCCTCAC TTTCACTCTC ACTATCTGTT GACTTCACAT GGCTTCCACC 
GCCGCAACTG CAGCTCTTTC GATCATCAAA TCCACCGGTG GCGCCGCCGT 
TACACGCTCC TCCCGCGCCT CCTTTGGACA CATTCCCTCC ACATCTGTCT 
CCGCACGTCG CCTTGGCTTC TCCGCCGTCG TTGACTCTCG TTTCTCGGTC 
CACGTGGCGT CCAAGGTCCA CTCCGTGCGC GGAAAGGGCG CCAGGGGAGT 
GATTACGATG GCGAAGAAGA GTGTTGGAGA TCTGAATTCT GTAGATTTGA 
AGGGGAAGAA GGTGTTTGTT AGAGCTGATC TCAATGTACC TCTCGATGAC 
AACCAGAATA TCACTGACGA CACTAGAATC AGAGCCGCCA TTCCCACCAT 
CAAGTTTTTG ATTGAGAATG GTGCTAAGGT CATCCTCTCC ACTCATTTGG 
GAAGGCCAAA GGGTGTCACT CCAAAGTTCA GCTTGGCTCC TCTTGTTCCC 
AGATTATCAG AGCTCCTTGG TATTGAGGTC GTGAAAGCTG ATGATTGTAT 
TGGTCCAGAA GTGGAAACCT TGGTGGCTTC CCTTCCTGAA GGTGGAGTTT 
TGCTTCTTGA GAACGTGAGG TTTTACAAGG AGGAAGAGAA GAACGAACCT 
GATTTTGCTA AGAAGCTTGC TTCTCTAGCT GACCTTTATG TCAACGATGC 
GTTCGGGACT GCTCACAGAG CCCATGCTTC AACAGAGGGA GTCACTAAGT 
TCTTGAAGCC ATCAGTTGCT GGTTTCCTTT TGCAAAAGGA GTTGGACTAC 
CTTGTTGGTG CGGTTTCAAA CCCAAAGAGA CCATTTGCTG CCATTGTGGG 
AGGTTCCAAG GTCTCATCTA AGATTGGAGT TATCGAATCG CTTCTTGAGA 
AATGTGACAT CCTTCTGCTT GGTGGTGGAA TGATCTTTAC ATTCTACAAG 
GCGCAAGGTC TTTCCGTTGG CTCCTCCCTT GTTGAAGAAG ACAAGCTTGA 
ATTGGCTACA ACACTCCTTG CCAAGGCTAA GGCCAGAGGA GTCTCTCTGT 
TGTTACCAAC AGATGTTGTG ATTGCTGACA AGTTCGCTCC TGATGCCAAC 
AGCAAGATTG TGCCAGCATC AGCCATTCCT GATGGGTGGA TGGGATTGGA 
CATCGGTCCA GACTCGGTGA AAACATTCAA CGAAGCTCTG GATACCACGC 
AGACAGTCAT TTGGAATGGA CCAATGGGAG TTTTCGAGTT TGAAAAGTTT 
GCAAAAGGAA CTGAGGCGGT AGCGAATAAA CTAGCAGAGC TAAGCAAAAA 
GGGAGTGACA ACGATAATAG GAGGAGGAGA CTCGGTGGCA GCAGTGGAGA 
AAGTGGGAGT AGCAGGAGTC ATGAGTCACA TCTCCACAGG TGGTGGTGCC 
AGTTTGGAGC TCTTGGAAGG CAAAGTGCTT CCCGGTGTCG TCGCTCTTGA 
TGAAGCAACG CCAGTCACTG TTTAACAACA TCTCTTTATT ACACCTGAAG 
GGACCCCCCT AAATGAGTTT CTTCTTCTTA TTCTGTTGTA AATCAAAGTC 
TTTGTTGTAC CATCAAATCC ATAGAGAGGA GGGACTCTTT TTGTCTCAAA 
TAAAATCAAA TACAGTGACA TTCGCTAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT1G56190.1 [+] show detail - Phosphoglycerate kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Phosphoglycerate kinase 2.7e-162
FPrintScan Phosphoglycerate kinase 2.6e-100
FPrintScan Phosphoglycerate kinase 2.6e-100
FPrintScan Phosphoglycerate kinase 2.6e-100
FPrintScan Phosphoglycerate kinase 2.6e-100
FPrintScan Phosphoglycerate kinase 2.6e-100
FPrintScan Phosphoglycerate kinase 2.6e-100
FPrintScan Phosphoglycerate kinase 2.6e-100
FPrintScan Phosphoglycerate kinase 2.6e-100
FPrintScan Phosphoglycerate kinase 2.6e-100
HMMPanther Phosphoglycerate kinase 3.5e-265
Gene3D Phosphoglycerate kinase, N-terminal 1.5e-65
Gene3D Phosphoglycerate kinase, C-terminal 2.3e-80
PatternScan Phosphoglycerate kinase, conserved site 0
HAMAP Phosphoglycerate kinase 42.104
HMMPfam Phosphoglycerate kinase 9.3e-161

See the detailed result >

AT1G56190.1

Model type
Protein coding
Short Description
Phosphoglycerate kinase family protein
Computational Description
Phosphoglycerate kinase family protein; FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: phosphoglycerate kinase 1 (TAIR:AT3G12780.1); Has 10902 Blast hits to 10876 proteins in 3041 species: Archae - 254; Bacteria - 5279; Metazoa - 453; Fungi - 193; Plants - 515; Viruses - 0; Other Eukaryotes - 4208 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-07-I23 introduced

  • F01603 - Specific phenotypes were NOT observed.
  • F04920 - Specific phenotypes were NOT observed.
  • F05030 - Specific phenotypes were NOT observed.
  • F05712 - seed::increased size
  • F07146 - rosette leaf::desaturated green / rosette leaf::abnormal
  • F09042 - Specific phenotypes were NOT observed.
  • F09633 - Specific phenotypes were NOT observed.
  • F10832 - Specific phenotypes were NOT observed.
  • F11246 - Specific phenotypes were NOT observed.
  • F15031 - rosette leaf::desaturated green / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / cauline leaf::epinastic / whole plant::decreased height / stem::abnormal / root::present in greater numbers in organism
  • F16924 - Specific phenotypes were NOT observed.
  • F17601 - Specific phenotypes were NOT observed.
  • F22516 - seed::decreased size / seed::decreased length
  • F22723 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::abnormal / cauline leaf::desaturated green / stem::abnormal / rosette leaf::desaturated green / rosette leaf::decreased size / cauline leaf::decreased size / cauline leaf::desaturated green / cauline leaf::abnormal / stem::abnormal
  • F23806 - Specific phenotypes were NOT observed.
  • F24522 - Specific phenotypes were NOT observed.
  • F25132 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / sporophyte vegetative stage::decreased speed / stem::abnormal / rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::epinastic / rosette leaf::increased width / cauline leaf::epinastic / cauline leaf::desaturated green / cauline leaf::abnormal
  • F27437 - rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::abnormal / rosette leaf::abnormal / stem::decreased thickness
  • F27838 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

19 mutant lines found