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  3. RAFL07-08-C08

RAFL07-08-C08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01457)

full reading [+] show sequence

Nucleotide sequence: RAFL07-08-C08 - full reading 
ATTTGTCTTA TCTTTTCTTC TCCTTTCTCT CCACCATTTG TCTTATCTTT 
TCCTCTCCTT ACTCTCCATC AATGGCTTCT CTTATCTCTT TTTCTTTGCT 
CCCAAAACCA AAAGCCGTAA GAAGTTCAAT TTCAGCTCCT CAGACACAGA 
CAATAAATAC TGAAAAGCTT GAAGATAAAT TCGGACGAAA AGGCATAAAA 
TTCTCGGAAT CAAACAACAT TCCTATGGTA GAGCTTAAGG TCAGAAATGG 
AAGTTCATTA AAACTGAGTC TATCAGATGC TCATGTACTT TCATATAAGC 
CAAAGGTATA CTGGAAAGAC GAGGGATTCG AGGAAGTCCT TTACACAGTT 
GATGGTGATG AGAGCAGAGG TGGGGTTGGT GTTGTTATCG TAAACGGGGA 
AGAACCTAAA GGAGGGTCTT CAGTAATCTC AGGATGTGAT TGGAGTGTCA 
AGGATACTGA TTCAGACGCC ATTGATGCTC TTCAGATCGA ACTTAGCTGT 
ACGGCCGGGG TTCTCGACAT AACGTATATC GTCTCTCTCT ACCCAGTAAG 
CATGGCTACA GCTCTGGTGG TGAAGAACAA TGGTCGCAAA CCAGTTACCC 
TTAAACCGGG GATTATGAGT TACTTGAGGT TCAAGAAACG GAGTGGGGCA 
GGAATTCAAG GACTAAAGGG ATGCTCTTAT TGTCCCAACC CGCCTTTGTC 
ATCGCCTTTT GAGCTCTTGT CTCCTTCTGA GGCAATGAAG GCGGAATCTT 
CGGGGTGGTT CGGGTCGGAA GAAGGGGAAA AGCCGGGGAT TTGGGCAGTA 
GAAGATTCTG TTATTACACT TCTTGAGAAA AAGATGAGTA GAATATATGG 
TGCTCCTCCG GCTGAGAGAT TAAAGGCAGT CTATAACACT CCACCTTCCA 
AATTTGAAAC TATAGATCAG GGGAGAGGAT TGTTTTTCAG GATGATAAGG 
ATTGGGTTCG AAGAGATGTA TGTGGGATCC CCAGGATCGA TGTGGGACAA 
GTATGGGAAG CAACATTACT TCGTGTGCAC AGGTCCAACG TCAATGCTCG 
TTCCTGTCGA TGTAGCCTCC GGAGAGACAT GGAGAGGAGC AATGGTAATC 
GAGCATGATA ATTTGTAAAT TTCATTTACT ATAGTTCTGT CTTCTTCATT 
TTTTCCCTCT CTATTTTTGT TGCCATTTTT TCTTCTATAT ATTCAAAACA 
TGTTAATGAC TATACTAAAT CAATATACAA TAATGAACTT AGTAAATCAA 
AGTTGATGTG AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT1G64770.1 [+] show detail - NDH-dependent cyclic electron flow 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G64770.1

Model type
Protein coding
Short Description
NDH-dependent cyclic electron flow 1
Curator Summary
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
Computational Description
NDH-dependent cyclic electron flow 1 (NDF2); FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 5 (TAIR:AT1G55370.2); Has 82 Blast hits to 81 proteins in 22 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 5; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-08-C08 introduced

  • F28919 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found