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RAFL07-08-H05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01451)

full reading [+] show sequence

Nucleotide sequence: RAFL07-08-H05 - full reading
ACGGTTCCTC GTTCGTCCTC TCCCGTCGTC TCTCCGCACT AAATTGATGG 
GCACATCATC TGGGTCCAAT CTTCCTCACC AGATGCTACC TCCACGTCAG
CAACTACAAA CATCTCTTTC GCTTGTATCT TCAGATCCCC ACTTGTCACG
GTCTAATTCT GGCATTGTGC GTGAATCACC AGCTGAAAGT GCTAGCTCTC
AAGAAACTTG GCCAACCTCA AAATCTATTA TGGGAAGGAA GACAGATAGC
GGAAAGACAG GGCCTGACTC TCATGATCAA CATGTGATCC GCCATGTTTC
CATTGCTGAT AAGGTATCGC TACGGGACAT AGCTAGAGAG AGACTTGACA
TAGTCGCTGA GAGAATGCAT CGATTACCAG AAGAATATCT CGAGGAGTTA
AAGAATGGTC TTAAGGCTAT CCTTGAAGGA AATGGTGCGC AGCCTATAGA
TGAGTTTATG TTTCTGCAGA AGTTTGTCCA GACGAGATCT GATTTAACTT
CAAAGACACT TGTCAGGGCT CACCGAGTGC AGCTTGAAGT TCTTGTGGTT
ATAAACACTG GTATCCAAGC ATTCTTGCAC CCAAACATCA ATCTCTCTCA
GTCATCACTC ATCGAGATCT TTGTGTACAA GAGATGCAGA AACATAGCTT
GCCAAAACGA ACTCCCGGCT GATGGTTGTC CCTGTGAGAT ATGCGCTAAT
AGGAAAGGCT TCTGCAACCT GTGCATGTGT GTGATATGTA ACAAGTTTGA
CTTTGCAGTC AACACATGCC GCTGGATTGG CTGCGACGTG TGTTCTCATT
GGACTCATAC GGATTGTGCT ATTAGGGATG GGGAGATTTC GATGGGAGTT
TCTCCCAAGA GCGTATCTGG GATGGGAGAA ATGCTGTTCA AGTGTCGAGC
GTGCAACCAT ACTTCTGAAT TGCTGGGGTG GGTGAAAGAT GTGTTTCAGC
ACTGTGCACC AAACTGGGAT AGGGAATCTT TAATGAAGGA ACTTGACTTC
GTTAGTAGGA TTTTCCGTGG AAGCGAAGAT ACAAGAGGCC GGAAACTCTT
CTGGAAGTGT GAGGAGCTTA TGGAGAAGAT TAAAGGTGGA CTGGCTGAAG
CAACAGCGGC CAAGTTGATA CTCATGTTTT TCCAAGAAAT TGAATTGGAC
TCTCCAAAGA GCCTTGAAAG CGGAGAAGGT GGGGGTACGA TAGCACCTCA
AGATGCATGC AACCGAATTG CTGAAGTTGT AAAGGAAACA CTGAGGAAAA
TGGAGATAGT GGGTGAGGAA AAGACGAGGA TGTACAAGAA AGCGCGAATG
GGGCTTGAGG AATGCGAGAG AGAGGTAGAA GAGAAAGCAA AGCAAGTGGC
GGAACTGCAG ATGGAGAGGC AGAAGAAGAA ACAACAGATA GAAGAGGTGG
AGAGGATAGT GAGGCTGAAG CAAGCAGAGG CAGAGATGTT TCAGTTAAAA
GCAAACGAGG CAAAAGTGGA AGCAGAGAGA TTGGAAAGGA TTGTGAAAGC
GAAAAAGGAG AAAACAGAAG AGGAATACGC AAGTAACTAT TTGAAACTGA
GGCTGAGCGA GGCGGAGGCA GAGAAAGAGT ATCTGTTTGA AAAGATAAAA
GAGCAGGAAA GTGGTGGGAA TGGTGGTGAA GCGTCACAAG CAGTGATGTA
CTCAAAGATC AGAGAAATGC TGCATGGATA CAATGCATCG TCGCCAAGGG
TAGATCCAAG ATCAAACCAG CGAAATCCTT TCAGATCCAA TCCTTAGATG
TTTGTATTGT CTCTCTTTGT TTGTATTAAA AAAAAAATCC GAATCAATTA
AGGTTGGATT TGTGTGTGAA GTATTGTGGT CTTTGTATTC AAATTTTGCA
CATGATCGTC TATGTTGGGC CATAATGTTA TGCAAGCTTT GACAAAAAAA
AAAAAAAAA

Gene models with high sequence identity

  1. AT3G07780.1 [+] show detail - Protein of unknown function (DUF1423)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF1423, plant 1e-206
FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
HMMPanther MLP3.23 PROTEIN 8.4e-277
HMMPanther VERNALIZATION-INSENSITIVE PROTEIN 3 8.4e-277
Coil coiled-coil 0
HMMPIR Protein of unknown function DUF1423, plant 0
HMMSmart Zinc finger, PHD-type 0.00013

See the detailed result >

AT3G07780.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1423)
Curator Summary
Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.
Computational Description
OBERON1 (OBE1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT5G48160.2); Has 8996 Blast hits to 6188 proteins in 768 species: Archae - 88; Bacteria - 1159; Metazoa - 3345; Fungi - 619; Plants - 512; Viruses - 79; Other Eukaryotes - 3194 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-08-H05 introduced

  • F08916 - rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem internode::decreased length / rosette leaf::dark green / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / stem::desaturated green / cauline leaf::desaturated green / cauline leaf::abnormal / whole plant::decreased height / fruit::increased thickness / stem::abnormal
  • F16228 - Specific phenotypes were NOT observed.
  • F23311 - Specific phenotypes were NOT observed.
  • F24629 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found