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  3. RAFL07-08-L08

RAFL07-08-L08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03989)

full reading [+] show sequence

Nucleotide sequence: RAFL07-08-L08 - full reading 
ATTTTGTAAA GTTTTTTTTT TCCCAAATAG TACTTTTTTT TTGTTTGGCC 
TTCTTATAGA AAGAAGAACT CAAAGCACAG AGAGAAGATG AGCGAAGAAC 
AACCACACGC CAATCTAGCG GTTCCCGCGT TTAAAACTGA GAAAGAGCCC 
ATAACGCAAA CACGAAATGG TCAAAGTAGC GTTTGGCGTT TCGGTGGAAG 
TGATAAGGCA GCGAAAGCAT CCACCGTAAC GCTTAGAGGT GTCATCTACA 
TGCTCTTCGA CAACTGCGGC AAAGACGTCA ATAAGACCAT TTTACCCCTC 
GGCCACGGTG ACCCTTCCGT CTACCCTTGC TTCCGTACCT GTATCGAAGC 
TGAAGACGCC GTCGTCGACG TCCTTCGCTC CGGCAAAGGC AATTCTTACG 
GTCCCGGAGC TGGGATTCTC CCCGCAAGAC GAGCCGTTGC TGATTATATG 
AACCGAGATC TTCCGCACAA GTTAACGCCT GAAGATATTT TTCTGACCGC 
TGGATGCAAC CAAGGGATAG AGATCGTGTT CGAATCGTTG GCTCGACCAA 
ACGCAAACAT CTTGCTCCCA CGTCCTGGCT TCCCTCACTA CGACGCTCGT 
GCTGCTTACA GTGGTCTCGA GGTTCGCAAG TTTGATCTTC TTCCCGAGAA 
AGAATGGGAG ATTGATCTTG AAGGTATCGA AGCCATTGCA GACGAGAACA 
CTGTGGCTAT GGTTGTAATT AACCCCAACA ATCCCTGTGG AAATGTCTAC 
TCTCACGACC ATCTCAAAAA GGTTGCAGAG ACGGCTAGGA AGCTCGGGAT 
AATGGTGATC TCAGACGAAG TATATGACCG AACTATATTC GGAGACAATC 
CATTTGTTTC AATGGGGAAG TTTGCTTCGA TAGTCCCTGT ATTGACACTA 
GCAGGCATAT CTAAGGGATG GGTTGTTCCT GGATGGAAAA TTGGCTGGAT 
CGCCTTGAAT GATCCCGAGG GCGTTTTCGA GACCACCAAG GTGTTACAAT 
CCATCAAACA GAATCTTGAC GTAACTCCTG ACCCTGCCAC AATAATTCAG 
GCTGCACTTC CAGCGATCCT GGAGAAAGCG GACAAAAACT TCTTTGCAAA 
GAAGAACAAG ATACTCAAAC ATAATGTTGA TTTGGTGTGT GATAGGCTCA 
AGGACATCCC CTGTGTCGTC TGTCCCAAGA AACCTGAGTC TTGCACTTAC 
TTATTGACAA AGTTGGAGCT GTCATTGATG GATAATATCA AGGACGATAT 
AGATTTTTGC GTAAAACTGG CCAGAGAGGA GAATCTCGTG TTTCTACCAG 
GGGATGCTCT GGGTTTGAAG AACTGGATGA GGATAACCAT CGGAGTCGAA 
GCTCATATGC TTGAGGATGC ACTTGAGAGA CTGAAGGGTT TCTGTACACG 
TCATGCCAAG AAGACAGAGA CAGAAACTGA GTCACTTCAA GCTTTGAAAC 
TGAGTGATAA TAATCTCGAA ATGTAAAACA GAAGAGGATG TGTGTGCCCA 
AAAGAATATT CTTATGATAG ATAATTTTGA TTCTTGCTTT TCCATTTGAT 
TTCCCAAAGT ATTTGATTAT CTACATTAAT AAAAACTATG GTTATTTGTC 
AAATAGCAAT ATTGGGAACA TAAATGAAGG ATCTAGCATC CATGAAAGAG 
AATTTCTTTG TTTTTGGAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT2G20610.1 [+] show detail - Tyrosine transaminase family protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPfam Aminotransferase, class I/II 9.8e-53
HMMPIR Tyrosine transaminase 0
HMMTigr Tyrosine/nicotianamine aminotransferase 7.4e-302
Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 4.5e-53
HMMPanther TYROSINE AMINOTRANSFERASE 2.2e-218
HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 2.2e-218
superfamily Pyridoxal phosphate-dependent transferase, major domain 2.1e-80
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.00000000081
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.00000000081
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.00000000081
FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.00000000081

See the detailed result >

AT2G20610.1

Model type
Protein coding
Short Description
Tyrosine transaminase family protein
Curator Summary
Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.
Computational Description
SUPERROOT 1 (SUR1); FUNCTIONS IN: S-alkylthiohydroximate lyase activity, carbon-sulfur lyase activity, transaminase activity; INVOLVED IN: regulation of cell growth by extracellular stimulus, glucosinolate biosynthetic process, adventitious root development, indoleacetic acid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT4G28420.2); Has 40950 Blast hits to 40944 proteins in 3034 species: Archae - 1011; Bacteria - 29323; Metazoa - 781; Fungi - 784; Plants - 1326; Viruses - 0; Other Eukaryotes - 7725 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-08-L08 introduced

  • F16802 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism

Mutant lines with disrupted or induced

1 mutant line founds