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RAFL07-08-O14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87688)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL07-08-O14 - 5 prime EST 
GACCAAATAC AAACCCTAGC CGCCTTATTC GTCTTCTTCG TTCTCTAGTT 
TTTTCCTCAG TCTCTGTTCT TAGATCCCTT GTAGTTTCCA AATCTTCCGA 
TAAAAATGTC GGGTAAAGGA GAAGGACCAG CTATCGGTAT CGATCTTGGT 
ACCACTTACT CTTGCGTCGG AGTATGGCAA CACGACCGTG TTGAGATCAT 
TGCTAATGAT CAAGGAAACA GAACCACGCC ATCTTACGTT GCTTTCACCG 
ACTCCGAGAG GTTGATCGGT GACGCAGCTA AGAATCAGGT CGCCATGAAC 
CCCGTTAACA CCGTTTTCGA CGCTAAGAGG TTGATCGGTC GTCGTTTCTC 
TGACAGCTCT GTTCAGAGTG ACATGAAATT GTGGCCATTC AAGATTCAAG 
CCGGACCTGC CGATAAGCCA ATGATCTACG TCGAATACAA GGGTGAAGAG 
AAAGAGTTCG CAGCTGAGGA GATTTCTTCC ATGGTTCTTA TTAAGATGCG 
TGAGATTGCT GAGGCTTACC TTGGTGTCAC AATCAAGAAC GCCGTTGTTA 
CCGTTCCAGC TTACTTCAAC GACTCTCAGC GTCAGGCTAC AAAGGATGCT 
GGTGTCATCG CTGGTTTG

Gene models with high sequence identity

  1. AT5G02500.2 [+] show detail - heat shock cognate protein 70-1
    E-value: 0; Score: 100.00

3 prime EST [+] show sequence

Nucleotide sequence: RAFL07-08-O14 - 3 prime EST 
AGAAAACAAA TTTGATTAAA AACACATACA ACAATGTTAA CCAGATCTGG 
CAAACTCTAA AAAGCTTCAA CTTTTAACGA ACTTATTATA AACCTGTTTC 
AGTTTTTTTT TTTCCTTTTT TTTTTGGGAA TCTCCTTGGG ACTTTGGTCT 
GGTTTCTAAC AATACAGTGA TGATTGTATT CAAATTGAAA ATTTGGTAAG 
GGAAACAAAT AAGGAAGAAG AAGAAGAAGC ATAAAGGTTG GAGCGTGGGA 
CCTTCAATGG TGTCTTTTGA CTTGTAAGCT AAAACCCATC AACAAGAATC 
TGGAGGGTCT TCAAATGGAT AGTCGTAGTA TTATGAATGT GTGTTCTTTT 
AGCAACCCAT CACTGCACAA TTGTATACGA AAGTAGGAGA ATGTTTCCTG 
TCAAGTAGTG TCCACTGAGG TGGAC

Gene models with high sequence identity

  1. AT2G02870.3 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
    E-value: 0; Score: 99.06

AT2G02870.3

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G14330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02500.2

Model type
Protein coding
Short Description
heat shock cognate protein 70-1
Curator Summary
encodes a member of heat shock protein 70 family.
Computational Description
heat shock cognate protein 70-1 (HSC70-1); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cold, response to virus, response to heat; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G02490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-08-O14 introduced

  • F24109 - Specific phenotypes were NOT observed.
  • F26239 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found

4 mutant lines found