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  3. RAFL07-09-F22

RAFL07-09-F22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04025)

full reading [+] show sequence

Nucleotide sequence: RAFL07-09-F22 - full reading 
ATCTAATATC TCTTTCTCAA TTTCGGTTCC ACTTTCCTTT CGTTTGCAAA 
AACCCATCCC ATCAAAAATA AACAAGAGGG CCTAAAGAAG AATCCTAAAG 
ACTTTACGGG TCTTGTTTAG GATAAAAGAA ATGCCTGCCG GTGGATTCGT 
CGTCGGGGAT GGCCAAAAGG CTTATCCCGG CAAACTCACT CCCTTTGTTC 
TCTTCACTTG CGTTGTTGCT GCCATGGGCG GTCTCATCTT CGGATACGAT 
ATCGGAATCT CCGGTGGTGT GACGTCTATG CCGTCTTTCC TCAAGCGATT 
CTTCCCGTCG GTGTATCGGA AACAACAAGA GGACGCGTCA ACGAACCAGT 
ACTGTCAGTA CGATAGCCCG ACGCTAACGA TGTTCACATC GTCTCTATAT 
CTAGCGGCGC TAATTTCGTC GCTGGTGGCT TCCACCGTGA CAAGAAAGTT 
CGGACGGCGG CTCTCGATGC TCTTCGGCGG CATACTCTTC TGCGCCGGAG 
CTCTCATCAA TGGTTTCGCC AAACATGTTT GGATGCTCAT CGTCGGTCGT 
ATCTTGCTTG GTTTCGGTAT CGGTTTCGCT AATCAGGCTG TGCCACTGTA 
CCTCTCTGAG ATGGCTCCAT ACAAATACAG AGGAGCTTTA AACATTGGTT 
TCCAGCTCTC AATTACAATC GGAATCCTCG TCGCCGAAGT GCTAAACTAC 
TTCTTCGCCA AGATCAAAGG CGGTTGGGGA TGGCGGCTCA GTCTCGGAGG 
CGCGGTGGTT CCTGCCTTGA TCATAACCAT CGGCTCCCTC GTCCTCCCTG 
ACACTCCCAA TTCAATGATC GAGCGTGGCC AACACGAAGA AGCCAAAACC 
AAGCTCAGAC GAATCCGTGG TGTCGATGAC GTCAGCCAAG AGTTTGACGA 
TTTGGTCGCC GCTAGTAAAG AGTCGCAGTC GATAGAGCAC CCGTGGAGAA 
ACCTCCTCCG CCGCAAGTAC CGACCACATC TCACAATGGC CGTTATGATT 
CCGTTCTTTC AACAGCTAAC CGGAATCAAT GTGATTATGT TTTACGCTCC 
GGTTTTGTTC AACACCATTG GTTTCACGAC CGATGCTTCT CTCATGTCCG 
CTGTGGTCAC TGGCTCGGTT AACGTGGCCG CTACGCTTGT TTCTATCTAC 
GGTGTTGACA GATGGGGACG TCGGTTTCTC TTTCTTGAAG GTGGTACACA 
AATGCTTATA TGCCAGGCTG TGGTTGCAGC TTGCATAGGG GCCAAGTTTG 
GGGTAGACGG GACCCCTGGT GAGCTACCAA AGTGGTATGC TATAGTGGTT 
GTAACGTTCA TTTGCATCTA TGTGGCGGGT TTTGCGTGGT CGTGGGGCCC 
ACTAGGGTGG TTAGTACCGA GTGAAATCTT CCCGTTGGAG ATAAGGTCGG 
CGGCGCAGAG TATCACCGTG TCCGTGAACA TGATCTTCAC GTTCATTATC 
GCGCAAATCT TCTTGACGAT GCTTTGTCAT TTGAAGTTTG GGTTATTCCT 
TGTTTTCGCC TTTTTCGTGG TGGTGATGTC GATCTTTGTA TACATTTTCT 
TGCCGGAGAC GAAAGGGATT CCGATAGAGG AGATGGGTCA AGTGTGGAGG 
TCACACTGGT ATTGGTCAAG GTTTGTGGAG GATGGTGAGT ATGGGAATGC 
GCTTGAGATG GGCAAGAACA GTAACCAAGC TGGAACGAAG CATGTTTGAT 
TTATCATTGT TTTTAATGAG AGTTTTAAGA AAGAAAGAAA AAAGATTTGT 
AATTTCTAAT GTCGTAAAGG AAAAAGTGTA TTAGCCTAGA TATTTATTGG 
TGTTTATATA ATTCAATACC ACATGAAGAA ATTATGCATA TGATTCTTCG 
CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT1G11260.1 [+] show detail - sugar transporter 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Sugar/inositol transporter 3.5e-33
FPrintScan Sugar/inositol transporter 3.5e-33
FPrintScan Sugar/inositol transporter 3.5e-33
FPrintScan Sugar/inositol transporter 3.5e-33
FPrintScan Sugar/inositol transporter 3.5e-33
superfamily Major facilitator superfamily, general substrate transporter 4.5e-62
PatternScan Sugar transporter, conserved site 0
PatternScan Sugar transporter, conserved site 0
ProfileScan MFS 51.872
HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 3.7e-242
HMMPanther SUGAR TRANSPORTER 3.7e-242
HMMPfam General substrate transporter 1.6e-143
HMMTigr Sugar/inositol transporter 5.2e-130

See the detailed result >

AT1G11260.1

Model type
Protein coding
Short Description
sugar transporter 1
Curator Summary
Encodes a H+/hexose cotransporter.
Computational Description
sugar transporter 1 (STP1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 12 (TAIR:AT4G21480.1); Has 29569 Blast hits to 28978 proteins in 2050 species: Archae - 503; Bacteria - 13950; Metazoa - 4366; Fungi - 6940; Plants - 2466; Viruses - 2; Other Eukaryotes - 1342 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-09-F22 introduced

  • F01905 - Specific phenotypes were NOT observed.
  • F10141 - seed::increased size / seed::increased length
  • F11251 - seed::increased size / seed::increased length
  • F12341 - Specific phenotypes were NOT observed.
  • F14008 - Specific phenotypes were NOT observed.
  • F24951 - Specific phenotypes were NOT observed.
  • F25751 - stem::increased thickness / stem::abnormal / cauline leaf::dark green

Mutant lines with disrupted or induced

20 mutant lines found