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RAFL07-09-G24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04029)

full reading [+] show sequence

Nucleotide sequence: RAFL07-09-G24 - full reading
AAAAACTGAA CAAAATTTGA AGAGTTATTA AAATGGGGTG TACATCTTCC 
AAGCAAGCAA AAGCTAACGT CGTCGCCGAC GTTTACAAAC CACCGCCGTC
TAGTTTCGCG GTGTTTGATG TCAACGCCAT CCAAGAGCCA TGGCTAAAAT
TTGAACATGA AGATGATGAG AAACCGCCAC GCTCCACCGT CTTCGACCGT
CTCGACGAGG ATGATGATGA TGATGATGAT GATGGTGATG ACGCTCCTAA
AACATGGGAA GAAGTCAGCA AATCTCTAGA AACTAAACTT AAACCTGCCG
CCGTTAAACC GCCGGAAGTA GACTCTGTTA AACCTCCGGC GACTCCTCCA
CGGCGGCTTC CGCGGAAGAG CGCATCGTTC CACACACTGG ACGAGCTTGA
AGTGAGGGCC AAAAGAAGCA TCGCCGCGCA AATCCCGACG ACAATGGTTA
AGCTTAAGAG AACCGAGTCG ATGTCCAAGC TAAGACCCGA GTCAGATGAT
CGAACCGAGT CCACTCAGTC GTCCTACTCG GGGCCTCGGT CAGTGAAGGA
GAACATATTC GTCAAGAGAG ACAGAGAACG GAGGGAGAAA GAAGGGAACA
AGAAGCCGGT GATGAACTGG GACCCACTTA GGGAGTTCCC GGAGAAGTGT
CCGCCGGGAG GAGGGGAAGG TTTGATTGTC TACACGACGT CGTTGCAAGG
AGTGCGTCGC ACGTACGAGG ATTGTATGCG TGTGAGGGCC ATCATGGAGC
AGCAAGGAGT TGTGGTGGAC GAGAGGGACG TGTCTTTAGA CGCCGGAGTC
TTGAGCGAGC TTAAGGAGCT TCTCCAAGAC GAAGCATCAG TGGCGCCGCC
GCGAGTGTTT GTGAAAGGGA GGTACTTGGG AGGAGCAGCG GAAGTGACAG
CGATGAATGA GAACGGGAAG TTAGGGAGGG TGTTGCGGTG GGCACGTGTG
GAGAGAGTAG GGGAGGAAGG GAGGCTCACG TGTGAAGGGT GCGGAGGAGC
GAGGTGGTTG CCTTGTTTCG AGTGCGGCGG AAGCTGTAAG GTGGCGGCGG
TTGGGGCGGC CAAAGGTGAA AGGTGGGAGA GGTGTGTCAA GTGTAATGAG
AATGGATTGA TTCGTTGTCC CGTGTGTTTT GTTAATTAAG AACATTATTA
GTTTACACAA GCAAATAGAG GTGTGTCAAA TATACTTTGT CCCGTTTGTT
TTGTTATATG TATGTGACAC GTTTGATTTT GTGGAATTGA AAATGATTTG
AAACCAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G64500.1 [+] show detail - Glutaredoxin family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Glutaredoxin 2.6e-10
ProfileScan Glutaredoxin 15.222
superfamily Thioredoxin-like fold 2.2e-19
Gene3D Thioredoxin fold 4.7e-14
HMMPanther GLUTAREDOXIN-1, GRX1 2.9e-07
HMMPanther GLUTAREDOXIN 2.9e-07

See the detailed result >

AT1G64500.1

Model type
Protein coding
Short Description
Glutaredoxin family protein
Computational Description
Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT4G10630.1); Has 634 Blast hits to 632 proteins in 121 species: Archae - 0; Bacteria - 58; Metazoa - 133; Fungi - 28; Plants - 384; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-09-G24 introduced

  • F14326 - Specific phenotypes were NOT observed.
  • F14835 - stem::increased thickness / stem::abnormal / cauline leaf::epinastic / cauline leaf::abnormal / fruit::decreased length / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found