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RAFL07-09-G24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04029)

full reading [+] show sequence

Nucleotide sequence: RAFL07-09-G24 - full reading 
AAAAACTGAA CAAAATTTGA AGAGTTATTA AAATGGGGTG TACATCTTCC 
AAGCAAGCAA AAGCTAACGT CGTCGCCGAC GTTTACAAAC CACCGCCGTC 
TAGTTTCGCG GTGTTTGATG TCAACGCCAT CCAAGAGCCA TGGCTAAAAT 
TTGAACATGA AGATGATGAG AAACCGCCAC GCTCCACCGT CTTCGACCGT 
CTCGACGAGG ATGATGATGA TGATGATGAT GATGGTGATG ACGCTCCTAA 
AACATGGGAA GAAGTCAGCA AATCTCTAGA AACTAAACTT AAACCTGCCG 
CCGTTAAACC GCCGGAAGTA GACTCTGTTA AACCTCCGGC GACTCCTCCA 
CGGCGGCTTC CGCGGAAGAG CGCATCGTTC CACACACTGG ACGAGCTTGA 
AGTGAGGGCC AAAAGAAGCA TCGCCGCGCA AATCCCGACG ACAATGGTTA 
AGCTTAAGAG AACCGAGTCG ATGTCCAAGC TAAGACCCGA GTCAGATGAT 
CGAACCGAGT CCACTCAGTC GTCCTACTCG GGGCCTCGGT CAGTGAAGGA 
GAACATATTC GTCAAGAGAG ACAGAGAACG GAGGGAGAAA GAAGGGAACA 
AGAAGCCGGT GATGAACTGG GACCCACTTA GGGAGTTCCC GGAGAAGTGT 
CCGCCGGGAG GAGGGGAAGG TTTGATTGTC TACACGACGT CGTTGCAAGG 
AGTGCGTCGC ACGTACGAGG ATTGTATGCG TGTGAGGGCC ATCATGGAGC 
AGCAAGGAGT TGTGGTGGAC GAGAGGGACG TGTCTTTAGA CGCCGGAGTC 
TTGAGCGAGC TTAAGGAGCT TCTCCAAGAC GAAGCATCAG TGGCGCCGCC 
GCGAGTGTTT GTGAAAGGGA GGTACTTGGG AGGAGCAGCG GAAGTGACAG 
CGATGAATGA GAACGGGAAG TTAGGGAGGG TGTTGCGGTG GGCACGTGTG 
GAGAGAGTAG GGGAGGAAGG GAGGCTCACG TGTGAAGGGT GCGGAGGAGC 
GAGGTGGTTG CCTTGTTTCG AGTGCGGCGG AAGCTGTAAG GTGGCGGCGG 
TTGGGGCGGC CAAAGGTGAA AGGTGGGAGA GGTGTGTCAA GTGTAATGAG 
AATGGATTGA TTCGTTGTCC CGTGTGTTTT GTTAATTAAG AACATTATTA 
GTTTACACAA GCAAATAGAG GTGTGTCAAA TATACTTTGT CCCGTTTGTT 
TTGTTATATG TATGTGACAC GTTTGATTTT GTGGAATTGA AAATGATTTG 
AAACCAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G64500.1 [+] show detail - Glutaredoxin family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Glutaredoxin 0.00000000026
ProfileScan Glutaredoxin 15.222
superfamily Thioredoxin-like fold 2.2e-19
Gene3D Thioredoxin fold 0.000000000000047
HMMPanther GLUTAREDOXIN-1, GRX1 0.00000029
HMMPanther GLUTAREDOXIN 0.00000029

See the detailed result >

AT1G64500.1

Model type
Protein coding
Short Description
Glutaredoxin family protein
Computational Description
Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT4G10630.1); Has 634 Blast hits to 632 proteins in 121 species: Archae - 0; Bacteria - 58; Metazoa - 133; Fungi - 28; Plants - 384; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-09-G24 introduced

  • F14326 - Specific phenotypes were NOT observed.
  • F14835 - stem::increased thickness / stem::abnormal / cauline leaf::epinastic / cauline leaf::abnormal / fruit::decreased length / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found