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RAFL07-09-K01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17284)

full reading [+] show sequence

Nucleotide sequence: RAFL07-09-K01 - full reading 
GATAACATCT TCAAAACATT CTAAAATGGC CACTTCCGTC AATGGTTCCC 
ATCGTCGTCC ACATTACTTG CTTGTAACAT TCCCAGCGCA AGGTCACATC 
AACCCGGCGC TTCAACTAGC CAACCGCCTC ATCCACCACG GTGCAACCGT 
CACATACTCC ACCGCAGTCT CTGCTCACCG ACGTATGGGC GAGCCACCTT 
CCACAAAAGG TCTATCCTTC GCTTGGTTCA CCGATGGATT CGACGACGGT 
CTCAAGTCAT TCGAAGACCA GAAAATCTAC ATGTCCGAAC TCAAACGATG 
TGGTTCAAAC GCCCTGAGAG ACATCATCAA AGCCAATCTT GACGCCACCA 
CCGAAACAGA GCCTATCACC GGGGTAATCT ACTCTGTTCT CGTCCCGTGG 
GTTTCTACGG TAGCGCGTGA GTTTCACCTC CCAACTACAC TTCTCTGGAT 
TGAACCAGCT ACTGTACTAG ACATCTACTA CTACTACTTC AACACCTCTT 
ACAAACATCT CTTCGACGTT GAACCGATTA AATTACCGAA ACTGCCACTG 
ATCACCACCG GTGACCTCCC GTCGTTTCTT CAACCTTCGA AGGCATTACC 
GTCAGCTCTT GTGACTCTAA GAGAACATAT CGAAGCTCTC GAAACGGAAT 
CAAACCCTAA GATTCTTGTT AACACATTCT CTGCTTTGGA ACACGATGCT 
TTAACCTCTG TTGAGAAACT CAAGATGATC CCAATCGGAC CGTTGGTTTC 
TTCCTCCGAG GGTAAAACCG ATCTTTTCAA ATCTTCCGAC GAGGATTACA 
CGAAATGGTT AGACTCGAAG CTCGAGAGAT CAGTGATTTA CATTTCCTTA 
GGCACACACG ACGATGATTT ACCAGAGAAA CACATGGAAG CGCTTACTCA 
CGGCGTGTTA GCTACAAACA GACCGTTTTT ATGGATCGTG AGGGAGAAAA 
ATCCAGAAGA GAAGAAGAAG AATCGGTTTC TTGAATTGAT CAGAGGAAGT 
GATCGAGGAT TGGTGGTGGG ATGGTGTTCT CAGACAGCTG TTTTGGCGCA 
TTGTGCTGTG GGATGTTTTG TGACTCATTG TGGTTGGAAT TCGACGTTGG 
AGAGTTTAGA GAGTGGTGTT CCGGTGGTTG CGTTTCCGCA GTTTGCTGAT 
CAGTGTACAA CGGCGAAGCT TGTGGAGGAT ACGTGGAGGA TTGGAGTGAA 
GGTGAAGGTT GGGGAGGAAG GAGATGTGGA TGGGGAGGAG ATTAGAAGGT 
GTTTGGAGAA GGTGATGAGT GGTGGAGAAG AGGCGGAGGA GATGAGAGAG 
AATGCAGAGA AGTGGAAGGC GATGGCTGTT GATGCGGCAG CGGAAGGTGG 
ACCGTCGGAT TTGAATCTTA AAGGTTTTGT GGACGAGGAT GAGTAGTGGG 
TTTTAAGTTT TTGAAGTTAA AGAATGTGCA TCTTACCTTG TTCAAATAAA 
GAGAACAAAC AGAGAAGAAG GTCTCGTTTA TTCACTCTTG TACTCCTCCT 
GATTGGTCAT CTAGAAGAAA AGAAGGTCTC GTTAATTAAC ATTACAAAGC 
AGCCTTTTCT TTGTATCCTT TAAATTCACT CAAAGCTCCC TTTGTAGACA 
AACTCTTCTT CTCTTTGTTG AAACAATAAA CCGGTGCTTG TCAAAAAAAA 
AA

Gene models with high sequence identity

  1. AT4G14090.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 9.2e-26
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 7.5e-54
HMMPanther UDP-GLUCOSYLTRANSFERASE 3.8e-109
HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 3.8e-109
PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
Gene3D no description 9.5e-18

See the detailed result >

AT4G14090.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Curator Summary
The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, anthocyanin 5-O-glucosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: indole-3-acetate beta-D-glucosyltransferase (TAIR:AT4G15550.1); Has 7764 Blast hits to 7700 proteins in 467 species: Archae - 0; Bacteria - 501; Metazoa - 2108; Fungi - 44; Plants - 4999; Viruses - 48; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-09-K01 introduced

  • F07623 - Specific phenotypes were NOT observed.
  • F12901 - Specific phenotypes were NOT observed.
  • F17608 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found