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  3. RAFL07-09-K22

RAFL07-09-K22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04039)

full reading [+] show sequence

Nucleotide sequence: RAFL07-09-K22 - full reading 
TCTTGTCCTG ATCTTCTTCT TCTTTCTTCC CAGTTTCTCT CTTCGAGCTT 
CCGGAATCTT TGGTGATCAC CGACCGGATC TGGACGAAGA ATCTCGTTAA 
CAAACTCAAC AAGCATTCTC CAAAGCTTCC TCCTTTTTCT TCAACGATCG 
TCATTGCATT GTAATTTGGA GAGTTTAGCT ACAAAGTCTG TCTTCATCGA 
ATTAAGATCT ATCTGATTTT TCTGGGTGGT TCTCATGTGT GAGATTTTTG 
ATGGGTTTAG AGTTGTCGGA TATGGAAGGT TCTTCTTATC TTTGATTTGT 
TTTATATATT AAGCGGCAGA ATTTGAGGTT GACTTGAGCG AGAATCTGGA 
TTCTTTCGAG GAGTATTTAA TGTTCCTGAG AATTCCCTGT TTTTGCGTCA 
AGTTTTCATT TTTCTGAGTG TTAATAAATT TAGAATCATT AGTGCAGCAG 
ATAGAGAGAG AGTGTGTAAA TCTGAGGAAG ACTCTCTGTG GATTTGATTC 
GTCTTTGTGA GTCAGGAATC TGTTTGATGA AATTCCCCTG TGGAGAGTTT 
TAGGATTTTA GAAAATGTGT AAAGCGGAGA AGTTTCTTTA TCACAGGAAA 
CTCTGGGAGA TGAAGGTTAA GTTTCTAGGA GATAGTAAGA TTGACAAGCT 
TAAGAACTCC TTGGTTTTGA GGTCTCGTAT GAGCTTATGG ATGATTCGTG 
CTATGACTAT ATTGTTGCTA TGGAGTTGCT TTGTTCATTT GGTTGCTGTG 
GGAGAGATGT GGGGACCTAG ATTGTTGAAA GGCTGGCCTT CTTGTTTCAA 
TCACCATGAC TTCCCCATTG CTGCAGAAAT GACTTCTCTT CCCATGAAAA 
TCGCCCTCCC ACCTAAAAGG ATATATCAGA ACAATGGCTA TCTTATGGTT 
TCTTGCAATG GAGGACTCAA CCAAATGCGA GCAGCGATAT GTGATATGGT 
CACTATTGCA AGATACATGA ATGTCACACT TATTGTCCCA GAGCTTGACA 
AGACCTCGTT TTGGAATGAT CCAAGTGAGT TCAAAGACAT ATTCGACGTG 
GACCATTTCA TAAGTTCTTT AAGGGACGAG GTTCGTATAC TAAAAGAGCT 
TCCTCCAAGG CTTAAGAGAA GGGTTAGGCT CGGGCTGTAC CACACCATGC 
CTCCTATTAG CTGGTCCAAC ATGTCCTACT ACCAAGACCA GATTCTTCCG 
CTGGTGAAGA AGTATAAGGT GGTACATCTG AACAAGACCG ATACTCGACT 
TGCTAATAAC GAACTACCTG TTGAGATTCA GAAGCTGCGA TGCCGAGCAA 
ATTTCAATGG GCTTAGGTTT ACTCCAAAGA TTGAGGAATT GGGTAGAAGA 
GTAGTCAAGA TTCTCAGGGA GAAAGGTCCC TTTCTAGTTC TGCATCTCAG 
ATACGAAATG GATATGTTGG CATTTTCTGG TTGCTCACAT GGTTGCAACC 
GCTACGAAGA GGAAGAACTA ACAAGAATGA GATATGCTTA TCCGTGGTGG 
AAAGAGAAAG TAATAGACTC CGAGTTGAAG AGGAAAGAAG GTCTTTGCCC 
ATTGACTCCT GAAGAAACAG CTCTTACGCT ATCTGCATTG GGTATTGACC 
GAAATGTTCA GATTTACATA GCTGCAGGAG AAATATACGG TGGTAAAAGG 
CGGTTAAAGG CTTTAACAGA TGTTTTTCCA AATGTGGTGA GGAAAGAAAC 
TCTACTCGAT TCTTCTGATT TGAGTTTTTG TAAAAACCAT TCTTCTCAAA 
TGGCTGCTCT TGATTACCTT ATCTCTCTCG AAAGTGATAT ATTCGTTCCT 
ACTTATTACG GAAACATGGC GAAAGTCGTG GAAGGTCATC GCAGGTTCTT 
GGGGTTCAAG AAGACAATTG AGCTAAACCG GAAGTTGTTG GTTAAGCTGA 
TAGATGAATA TTATGAAGGA TTGTTGAGCT GGGAAGTGTT TTCAACCACG 
GTTAAGGCCT TTCACGCTAC ACGAATGGGA GGGCCAAAGA GACGGCTAGT 
GATTCCAAAT AAACCGAAAG AAGAAGACTA CTTCTATGCT AATCCATATG 
AATGTCTTCA GCTATTACAT GAGAATAATG GCAATTCACT AGAAGAAACC 
TAATAAACAG ATCCTCCAAT GTTGTCTTTC GTGGGGGTGA TGCAGGACAT 
GGATGGAGTT ATCTAATGGG AATGATATAT CCATCTGGAA GATTAGGTTT 
CTTAAAGAGA TGAGAAGTTA TTTAGGGTTC TTTGGTGTAC AGAGATATCT 
GAAGAGCTTC AGTTGATGCA GAAGAAAGGT TGAAGCTTTC AGGGTCATGT 
TTGCAAATTT GTCCTATGCC ACCTCAGTCA TCATCATCCA TGGCCTTGCA 
GTTTTGGTAG CTAAAAAGTA AAATGCAGTG TAAAATTATA TCACACATAT 
GATTATCATT ATTATTATTT TACAAAATAA ATAATTATTC TAAAAAAAAA 
AAAAAA

Gene models with high sequence identity

  1. AT3G02250.1 [+] show detail - O-fucosyltransferase family protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

See the detailed result >

AT3G02250.1

Model type
Protein coding
Short Description
O-fucosyltransferase family protein
Computational Description
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G15740.1); Has 830 Blast hits to 821 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 830; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-09-K22 introduced

  • F12529 - Specific phenotypes were NOT observed.
  • F21418 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found