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  3. RAFL07-09-O18

RAFL07-09-O18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09498)

full reading [+] show sequence

Nucleotide sequence: RAFL07-09-O18 - full reading 
ATCATCATCA TCATTGATCG AGATCTCTCC GGCGACAAAA ACACAGCGAG 
CGACTGACGA AAATTAAACA CTTCGCCGTC ACAGACACTC TCTCTATATA 
TATAATCTCC GGCGATGGAG AGTTTCGCTC TTCACTCTCT CTCCACCACC 
GCCACTTCCA CCTTACTCTC CCATCATCAT CATCACCATC CCTCACGTCT 
CTCTCTTCTC CGTCGTACCT CTTCGAGATC TCCGCCTTCA ACAATCTCCC 
TCCGATCTCT CTCCGTTCAA CCTCTCTCCT TCCCTCTTCT CAAACCAATT 
CCTCGATTCT CCACACGAAT CGCCGCCGCA CCGCAAGACA ACGCTCCTCC 
TCCTCCTCCC CCATCTCCGT CTCCGTCTCC GTCTCCTCAA GGAGCGAAAC 
TCATCCCTCT GATTCTCTCA ATCTCCGTCG GCCTAATCCT CCGATTCGCT 
GTTCCTGTAC CAGAAGGAGT CACACCACAA GGCTGGCAAT TACTCTCAAT 
CTTCCTCTCA ACAATCGCTG GTCTCGTCCT TAGTCCTCTC CCAGTCGGAG 
CTTGGGCTTT CATTGGTCTC ACCGCTTCAA TCGTCACCAA AACGCTTTCT 
TTCTCCGCCG CTTTCTCAGC TTTCACAAGC GAGGTTATCT GGTTGATCGT 
TATCTCTTTC TTCTTCGCTC GTGGATTCGT CAAAACAGGT CTTGGTGATA 
GAATCGCTAC TTACTTTGTC AAATGGCTTG GGAAGAGTAC TTTAGGTCTA 
TCTTATGGTC TCACGCTTAG TGAGGCTTTA ATTGCTCCTG CGATGCCTAG 
TACTACTGCT AGAGCTGGTG GCATTTTCTT GCCCATCATC AAGTCTCTAT 
CGCTCTCGGC TGGAAGTAAA CCGAATGATT CTTCTTCGAG GAAACTAGGC 
TCTTACTTGA TTCAATCTCA ATTCCAGTGC GCCGGAAACT CTAGTGCGCT 
TTTCTTGACT GCTGCAGCTC AAAATTTGCT GTGTCTCAAG TTAGCAGAGG 
AGCTTGGAGT AGTGATCTCA AACCCGTGGG TTTCTTGGTT TAAGGCTGCT 
AGTCTACCTG CAATCATATC ACTTCTTTGT ACTCCACTTA TCCTCTATAA 
GCTTTATCCT CCAGAAACAA AGGACACACC TGAGGCTCCA GGTATTGCTG 
CAACGAAACT CAAGCAAATG GGCCCTGTCA CTAAAAACGA ATGGATCATG 
GTCGGTACAA TGCTTCTTGC TGTCACTCTT TGGATCTGCG GAGAGACTCT 
GGGAATACCA AGTGTTGTAG CTGCCATGAT CGGTCTCTCC ATACTTCTTG 
TGCTAGGTGT CCTTAATTGG GACGATTGCC TAAGCGAAAA ATCGGCATGG 
GACACATTAG CTTGGTTTGC TGTCTTGGTG GGAATGGCAG GACAGCTTAC 
AAACCTCGGT GTTGTAACGT GGATGTCTGA TTGTGTAGCT AAAGTTCTAC 
AATCTCTCTC CTTGAGTTGG CCTGCTGCGT TTGGACTTCT TCAAGCAGCC 
TACTTCTTCA TTCACTACCT TTTCGCAAGC CAAACCGGTC ATGTTGGAGC 
TCTCTTCTCA GCTTTCCTTG CTATGCATAT AGCAGCAGGT GTTCCAGGAA 
TTCTAGCTGC ACTTGCTTTA GCATACAACA CCAATCTTTT TGGTGCTTTG 
ACTCATTACA GTAGCGGTCA AGCCGCTGTC TACTATGGAG CGGGTTATGT 
TGATCTGCCT GATGTATTCA AGATTGGATT CGTGATGGCG ACGATTAATG 
CGATAATCTG GGGAGTAGTT GGGACTTTCT GGTGGAAATT TTTGGGTCTC 
TACTAAGAGC TCCTCAGAAG AAAGTTGTTC TTGAAGAAGC TTTGCAAAGT 
CCGGTACAAT TCTTTTGTTG ATCATTCGGT TTTGAGGCTT CATTTTTTTC 
TACTTGCAAT TAGAGAATCA GACAATTCTT TGTCAAATAG ATATACAGAA 
GATCTATCTC GATTTGTTCT CTTTATGAAA TATCGTGTTT CTTTTTCGGA 
GAAAGAGTAA GATACATGAT GAAAATCTGT TTTGGGGGCG TTTTTGTTAA 
AACGAAAATG TCTGGGTAAT AAAAAACAGA GAAAATAGTC ATAAAAAAGG 
AGTGAATCTT CAAATTACCT ATTAAAAAAA AAATAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT5G64290.1 [+] show detail - dicarboxylate transport 2.1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Sodium/sulphate symporter 2e-140
HMMTigr Sodium/sulphate symporter 2.4e-136
HMMPanther SODIUM/CARBOXYLATE COTRANSPORTER RELATED 6.5e-238
HMMPanther CATION TRANSPORTER RELATED 6.5e-238

See the detailed result >

AT5G64290.1

Model type
Protein coding
Short Description
dicarboxylate transport 2.1
Computational Description
dicarboxylate transport 2.1 (DIT2.1); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: malate transport, response to nematode; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: dicarboxylate transporter 2.2 (TAIR:AT5G64280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-09-O18 introduced

  • F06033 - Specific phenotypes were NOT observed.
  • F06232 - Specific phenotypes were NOT observed.
  • F20037 - Specific phenotypes were NOT observed.
  • F26343 - Specific phenotypes were NOT observed.
  • F28906 - rosette leaf::desaturated green / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / stem::present in fewer numbers in organism / rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / stem::decreased thickness / stem::abnormal / cauline leaf::desaturated green / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

5 mutant lines found