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RAFL07-10-D02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09501)

full reading [+] show sequence

Nucleotide sequence: RAFL07-10-D02 - full reading 
GAGCAGCCGC GCTTTTTGGC CGAGGAAGGA TAAAGAGAGA CGCCATGGGA 
AGAAGACCTG CGAGGTGTTA CCGTCAGATC AAGGGTAAGC CATACCCAAA 
GTCTCGCTAC TGTCGTGGTG TGCCAGATCC AAAAATCAGG ATCTACGATG 
TTGGTATGAA GAGGAAGGGT GTTGATGAGT TTCCATTCTG TGTCCATTTG 
GTGTCATGGG AGAAGGAGAA TGTGTCAAGT GAAGCACTTG AAGCTGCCCG 
TATTGCTTGC AACAAGTACA TGGTGAAGTC TGCTGGAAAA GATGCTTTTC 
ATTTGAGGAT TAGGGTTCAT CCTTTCCATG TTCTCAGGAT TAACAAGATG 
CTTTCGTGTG CTGGAGCTGA TAGGCTTCAG ACTGGTATGA GAGGTGCTTT 
TGGTAAAGCT TTGGGTACTT GTGCTCGTGT TGCTATTGGA CAGGTTCTTT 
TGTCTGTTCG TTGCAAGGAT GCCCATGGTC ACCATGCTCA AGAGGCTCTT 
CGTCGTGCTA AGTTCAAGTT CCCTGGTCGT CAAAAGATTA TTGTCAGCAG 
GAAATGGGGC TTCACGAAGT TTAACAGAGC TGACTTCACC AAGTTGAGGC 
AAGAGAAGCG TGTTGTCCCT GATGGTGTCA ACGCTAAGTT CCTCTCATGC 
CATGGACCTT TGGCTAACCG TCAGCCGGGA AGTGCCTTTT TGCCAGCCCA 
CTACTGAAGA GTATCAGAAC TGAAGTATCC TTCTCATTCC GGTGAAGAAG 
AATTATAATC AGCCTGAATC TTTTTACTTA TCGTTATCTC TGGTGTTGTT 
TTAAGTTTTT AGTTGGACAC AATCAGTATT CTGAATCTTT TTGTGACTCT 
TTTGTTTAAG CTCTGAAATG ATTTTGTTCC TTCGTTCTTG GCCATATATC 
TTCCAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G14320.1 [+] show detail - Ribosomal protein L16p/L10e family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ribosomal protein L10e 8.6e-82
HMMPfam Ribosomal protein L10e/L16 3.8e-31
superfamily Ribosomal protein L10e/L16 5.5e-80
HMMPanther 60S RIBOSOMAL PROTEIN L10 3.5e-169
HMMPanther Ribosomal protein L10e 3.5e-169
Gene3D no description 1.3e-76
HMMPIR Ribosomal protein L10e 1.1e-145
PatternScan Ribosomal protein L10e, conserved site 0

See the detailed result >

AT1G14320.1

Model type
Protein coding
Short Description
Ribosomal protein L16p/L10e family protein
Curator Summary
Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.
Computational Description
SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: cellular response to UV-B, translation; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1); Has 1679 Blast hits to 1677 proteins in 606 species: Archae - 325; Bacteria - 13; Metazoa - 562; Fungi - 162; Plants - 159; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-10-D02 introduced

  • F09118 - Specific phenotypes were NOT observed.
  • F23013 - Specific phenotypes were NOT observed.
  • F25308 - seed::increased size / seed::increased length
  • F25807 - Specific phenotypes were NOT observed.
  • F27947 - rosette leaf::dark green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::increased width / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased width / stem internode::decreased length / stem::abnormal

Mutant lines with disrupted or induced

6 mutant lines found