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Full-length cDNAs
RAFL07-10-D16

RAFL07-10-D16

RIKEN Arabidopsis Full-length cDNAs

GCTCGTGTCG AGGCGGCAGC AACACACTTG TCGTCTCTCC CTGTAGCTTC 
TCTGGAGTTT TCGCAGTCAC GAATCTTGTT TTGAAGAAAT TAATTTGAAC 
AAGGGTTTTA GGGCTTGGAT GCTTTGTTTT CATTGAAAAA GAAGTAGAAG 
GAGTGTATAC AAGGATTATG GGAACTCACA TCAATTTCAA CAACTTAGGA 
GGTGGTGGTC ATCCTGGAGG GGAAGGGAGT AGTAACCAGA TGAAGCCAAC 
GGGTAGTGTC ATGCCCTTGG CTAGGCAGTC CTCGGTCTAC TCCCTTACCT 
TTGATGAGTT ACAGAACACA CTAGGTGGAC CGGGAAAAGA TTTCGGGTCG 
ATGAACATGG ATGAACTCCT GAAGAGCATA TGGACTGCTG AGGAAGCTCA 
GGCCATGGCC ATGACTTCTG CGCCAGCTGC TACAGCGGTA GCGCAACCTG 
GTGCTGGTAT CCCACCCCCA GGTGGGAATC TCCAGAGGCA AGGTTCGTTG 
ACGTTGCCTA GAACAATTAG TCAGAAGACT GTTGATGAGG TGTGGAAATG 
TTTGATCACC AAGGATGGTA ATATGGAAGG TAGCAGCGGA GGCGGTGGTG 
AGTCGAATGT GCCTCCTGGA AGGCAACAGA CTTTAGGGGA AATGACACTT 
GAAGAATTTC TGTTCCGTGC TGGGGTTGTA AGAGAAGATA ACTGTGTTCA 
ACAGATGGGT CAGGTCAACG GAAACAATAA CAATGGGTTT TATGGTAACA 
GCACTGCTGC TGGCGGCTTA GGTTTTGGAT TTGGTCAGCC AAATCAAAAC 
AGCATAACAT TCAATGGTAC TAATGATTCT ATGATCTTGA ATCAGCCACC 
TGGTTTAGGG CTCAAAATGG GTGGAACAAT GCAGCAGCAA CAACAACAAC 
AGCAGTTGCT TCAGCAGCAA CAACAGCAGA TGCAGCAGCT GAATCAGCCT 
CATCCACAGC AGCGGCTGCC TCAAACCATT TTTCCTAAAC AAGCAAACGT 
AGCATTTTCT GCGCCTGTGA ATATAACCAA CAAGGGTTTT GCTGGGGCTG 
CAAATAATTC TATCAACAAT AATAATGGAT TAGCTAGTTA CGGAGGAACC 
GGGGTCACTG TTGCAGCAAC TTCTCCAGGA ACAAGCAGCG CAGAAAATAA 
TTCTTTATCA CCAGTTCCGT ATGTGCTTAA TCGAGGACGA AGAAGCAATA 
CAGGTCTAGA GAAGGTTATC GAGAGGAGGC AAAGGAGAAT GATCAAGAAT 
CGGGAATCAG CTGCTAGATC AAGAGCTCGA AAGCAGGCTT ATACATTGGA 
ACTGGAAGCC GAAATTGAAA AGCTCAAGAA AACGAATCAA GAACTGCAGA 
AAAAACAGGC TGAAATGGTG GAAATGCAGA AGAATGAGCT GAAAGAAACG 
TCGAAGCGAC CGTGGGGCAG CAAAAGGCAA TGCTTGAGAA GGACATTAAC 
CGGACCATGG TGAAGGATGA AGCAACAAGA ACGGATGAAC CAGACTCCTA 
GCTTGGGATT AATGTAATAG GATAGTGCTA CCTGTACAGG AGATTAAGAG 
AAATTGAGTG AAAGATCTAG GTTACAGAGT AGGAGAGAGT TTTCATTATG 
AATAAATGAC ATTTTGTGCC CTGACCTTTG TTAGTTTAGG TTTAGATTAT 
CCTCTGTTAT TGACTTATTG TGCTTTCTGG TTGTTAGGGT TTCTAAAAGA 
CATAGTTGTT TATATATATG TCTGACTTTG TATTAAGAAA AAAAAAAAAA 
AAA

Gene models with high sequence identity

AT3G19290.1 [+] show detail - ABRE binding factor 4
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	bZIP transcription factor, bZIP-1	5.1e-11
HMMSmart	Basic-leucine zipper (bZIP) transcription factor	7.5e-11
HMMPanther	CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF	1.6e-08
HMMPanther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	1.6e-08
ProfileScan	Basic-leucine zipper (bZIP) transcription factor	10.726
Coil	coiled-coil	0
Coil	coiled-coil	0
PatternScan	Basic-leucine zipper (bZIP) transcription factor	0

See the detailed result >

AT3G19290.1

Model type: Protein coding
Short Description: ABRE binding factor 4
Curator Summary: bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses.
Computational Description: ABRE binding factor 4 (ABF4); FUNCTIONS IN: protein binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: abscisic acid responsive element-binding factor 1 (TAIR:AT1G49720.1); Has 5268 Blast hits to 4676 proteins in 263 species: Archae - 0; Bacteria - 14; Metazoa - 1616; Fungi - 400; Plants - 1635; Viruses - 0; Other Eukaryotes - 1603 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL07-10-D16 introduced

F07841 - Specific phenotypes were NOT observed.
F14644 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

7 mutant lines found