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  3. RAFL07-10-N13

RAFL07-10-N13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17293)

full reading [+] show sequence

Nucleotide sequence: RAFL07-10-N13 - full reading 
CCCATCTTAC TCTCTCTGGT TCTTCTACTA GATCCGGATC TGGAACTTTC 
TCTACTCTCT GCTCATAAAG TTTCATTCTT TGGGGAGATC TGAGGCAACC 
CTTTTTCTCT GGTGCATGTG ACTAGGGATT GTGCCGTGGG TTTAGGATCA 
TGGCAATGGG GAAGTATTCT CGTGTAGACG GGAAGAAGTC ATCGGGATAT 
GGCTTAACCA TTACCATCGT TTTAATTGTT TCTCTATGTT TGGTTGGGGC 
GTGGATGTTC ATGTCTTCAT GGTCTGCTCC AACTGAGTCT ATTGACTTCT 
CTGCAAACGA GAGGACAAAA GATGTAGATA CTACTAAGAG TGATTTCAAA 
AGTGAAGAGG TTGATCGAGG TTCCAAGAGT TTTCCGGATG AAAAGAATGA 
GGAGACGGAG GTTGTGACAG AGACCAACGA AGAGAAGACT GATCCTGAGA 
AATCTGGTGA GGAGAACTCT GGTGAGAAAA CGGAGTCGGC TGAGGAAAGA 
AAGGAGTTTG ATGACAAAAA TGGTGATGGG GATAGAAAAA ATGGAGACGG 
TGAGAAAGAC ACGGAATCAG AAAGTGATGA AACCAAGCAA AAAGAGAAAA 
CACAACTGGA AGAGAGCTCA GAAGAAAACA AATCTGAGGA TAGTAATGGA 
ACCGAAGAGA ATGCTGGTGA ATCTGAAGAA AACACCGAGA AGAAGTCAGA 
AGAAAACGCT GGTGAAACTG AAGAGAGCAC TGAGAAGAGT AAGGATGTTT 
TCCCAGCTGG TGACCAGGCT GAAATCACAA AGGAGTCAAG CACTGGAAGT 
GGGGCTTGGT CTACCCAATT GGTGGAATCC CAGAACGAGA AGAAAGCACA 
AGTGTCCTCA ATTAAATGGA AAGTCTGCAA TGTGACAGCT GGACCAGACT 
ACATCCCTTG CCTTGACAAT TGGCAAGCTA TCAGAAAGCT TCATTCGACA 
AAGCATTATG AACATCGTGA GAGGCATTGT CCCGAGGAGT CTCCACGCTG 
CCTTGTTTCT CTTCCCGAAG GGTATAAGCG ATCCATCAAG TGGCCTAAGA 
GCAGAGAAAA GATCTGGTAC ACCAATATTC CACACACCAA GCTTGCAGAA 
GTCAAGGGAC ATCAAAACTG GGTGAAGATG AGTGGTGAAT ACTTAACATT 
CCCTGGTGGA GGTACTCAAT TCAAGAATGG TGCTCTTCAC TACATTGATT 
TCCTCCAAGA GTCATATCCT GATATTGCTT GGGGAAATAG GACTCGTGTT 
ATATTGGATG TTGGGTGTGG GGTTGCTAGC TTTGGGGGAT ATCTTTTTGA 
CAGAGATGTA CTCGCTTTGT CATTTGCACC CAAAGACGAA CACGAGGCAC 
AGGTGCAATT TGCTCTGGAA CGTGGTATTC CTGCAATGTC AAATGTTATG 
GGAACCAAGA GATTACCTTT TCCAGGATCT GTTTTTGACC TTATCCATTG 
TGCTCGTTGT AGAGTTCCTT GGCATATCGA AGGTGGTAAA CTACTTTTGG 
AGTTGAACCG TGCATTGAGG CCGGGTGGTT TCTTTGTCTG GTCAGCGACT 
CCAGTCTATA GGAAGACTGA GGAAGATGTT GGCATATGGA AAGCTATGTC 
GAAGCTAACA AAGGCAATGT GCTGGGAACT GATGACGATT AAGAAAGATG 
AACTGAATGA AGTTGGTGCT GCCATTACCA GAAGCCAATG TCGAATAAAT 
GCTACAATGA AAGATCTCAA AATGAGCCAC CTCTCTGCAA AGACTCTGAT 
GATCAAAATG CCGCCTGGAA TGTTCCACTT GAGGCATGTA TTCACAAAGT 
AACAGAAGAT TCATCAAAAC GCGGAGCAGT TTGGCCTGAA AGTTGGCCGG 
AAAGAGTGGA GACGGTTCCT CAGTGGTTAG ATTCTCAGGA AGGAGTATAT 
GGAAAACCTG CACAAGAGGA TTTCACAGCA GACCATGAAC GCTGGAAGAC 
TATTGTTTCA AAGTCATACC TCAACGGTAT GGGAATCGAT TGGTCTTATG 
TTAGAAATGT GATGGACATG AGAGCAGTCT ATGGAGGTTT TGCTGCTGCA 
TTGAAGGATC TGAAACTGTG GGTGATGAAT GTAGTTCCTA TCGACTCACC 
TGATACCCTT CCGATTATAT ACGAACGTGG TTTGTTTGGA ATCTATCATG 
ATTGGTGTGA ATCATTCAGC ACTTACCCTC GGACTTACGA CCTCCTTCAC 
GCTGATCATC TTTTCTCTTC ACTGAAAAAG AGGTGCAACT TGGTGGGCGT 
GATGGCTGAA GTAGACCGGA TTCTTAGACC ACAAGGAACT TTCATAGTAA 
GAGATGACAT GGAAACGATA GGAGAAATTG AGAAGATGGT GAAATCGATG 
AAATGGAATG TAAGAATGAC ACATTCCAAA GATGGAGAAG GATTGCTCTC 
TGTTCAGAAG TCATGGTGGC GTCCTACAGA GGCCGAGACC ATTCAGTCGG 
CAATAGCTTG AGGTCAAGGA AACGAAGAAG AGTGTGGGTT AATATAGTCG 
ACAGTTGTTC CTTTTACGAT CCAATTGATT GTTTCTTACA TGTATTAGTC 
GAATATTTGT ATCCCTTTTT TGCATTGAAG AAAGTTGTAT ACAAGACAAA 
AGTGTAATCT TATCGTATAA TGAGCTTTTG CTTTGGTCCG AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G29470.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
superfamily S-adenosyl-L-methionine-dependent methyltrans 2.7e-12
superfamily S-adenosyl-L-methionine-dependent methyltrans 6.3e-24
Gene3D no description 3.9e-06
HMMPfam Protein of unknown function DUF248, methyltransferase putative 1.2e-101
HMMPfam Protein of unknown function DUF248, methyltransferase putative 9.3e-120

See the detailed result >

AT1G29470.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G34300.2); Has 67484 Blast hits to 30961 proteins in 1935 species: Archae - 320; Bacteria - 15779; Metazoa - 19664; Fungi - 6042; Plants - 3831; Viruses - 666; Other Eukaryotes - 21182 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-10-N13 introduced

  • F26841 - Specific phenotypes were NOT observed.
  • F28635 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found