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  3. RAFL07-11-A11

RAFL07-11-A11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04115)

full reading [+] show sequence

Nucleotide sequence: RAFL07-11-A11 - full reading
AAAATTCACT CAACTTTCTC TCACTCCTTT TTTCTCTCTC TCTCTCTATC 
CTCTACAGAG CTCGCAGCAA CTAGCGCAGG TACTCTCTCT TTCTCACTCC
TTAATCTAGA TACTAAAGCT GATCATTTTC ATATCTCTCA GTAATCCGTT
TCGTCTGATC GGGATGTTGG AGAAGGTTGA AACTTTCGAC ATGAACAGAG
TCATTGATGA ATTCGATGAA ATGACTAGAA ACGCTCATCA AGTCCAGAAA
CAAACTTTGA AAGAGATTCT TCTCAAGAAC CAATCCGCCA TTTACTTACA
AAACTGTGGT CTCAATGGAA ACGCTACTGA CCCTGAAGAA GCTTTCAAAT
CTATGGTTCC TTTAGTCACT GATGTTGAAT TAGAGCCTTA CATCAAAAGA
ATGGTTGATG GTGACACTTC ACCTATTCTC ACTGGTCACC CTGTTCCTGC
CATTTCCTTA AGCTCTGGAA CTAGTCAAGG CCGTCCAAAG TTTATTCCTT
TCACTGATGA ATTAATGGAG AACACATTGC AACTGTTTCG CACTGCTTTT
GCCTTCAGAA ACAGAGATTT TCCCATTGAT GACAATGGCA AAGCTTTGCA
ATTTATCTTC AGCAGCAAGC AGTACATATC AACGGGAGGT GTCCCGGTTG
GAACCGCAAC CACAAACGTG TACCGCAACC CTAACTTCAA AGCTGGGATG
AAATCTATAA CGTCTCCTTC CTGTAGTCCC GACGAAGTTA TCTTTAGTCC
TGATGTCCAT CAAGCCTTGT ATTGCCATCT CTTATCCGGA ATTCTCTTCA
GAGATCAAGT TCAATACGTC TTTGCCGTCT TTGCTCACGG TCTAGTTCAC
GCTTTTAGAA CCTTTGAACA GGTTTGGGAA GAGATTGTTA CCGATATCAA
AGATGGTGTC TTAAGCAACC GTATTACTGT CCCATCGGTC CGTACTGCAA
TGTCGAAGCT GCTCACACCT AACCCTGAGC TAGCTGAGAC GATCCGCACC
AAATGTATGA GTTTGAGCAA CTGGTACGGA TTGATTCCCG CGCTCTTCCC
CAACGCAAAG TATGTTTACG GGATCATGAC TGGCTCCATG GAGCCGTATG
TGCCAAAGCT GAGACATTAC GCGGGTGATC TACCTCTTGT GAGCCATGAC
TACGGTAGCT CGGAAGGATG GATTGCTGCT AATGTTACCC CAAGGTTATC
TCCAGAGGAA GCTACATTTG CTGTGATTCC GAATCTCGGT TATTTCGAGT
TTCTCCCTGT ATCTGAAACA GGGGAAGGAG AGGAGAAACC GGTTGGTTTA
ACTCAAGTCA AGATTGGAGA AGAGTATGAA GTTGTCATCA CAAATTACGC
AGGGTTGTAT CGATACCGGC TTGGAGATGT GGTAAAGGTC ATTGGTTTCT
ACAACAACAC TCCCCAACTA AAATTCATAT GCAGGAGAAA CCTGATTCTC
TCGATCAACA TCGACAAGAA CACCGAAAGA GACCTTCAGC TTTCAGTAGA
ATCGGCTGCA AAGAGACTCT CAGAAGAAAA GATCGAGGTC ATAGACTTCT
CTAGCTACAT CGATGTCTCG ACAGATCCAG GACATAACGC TATCTTCTGG
GAGATTTCAG GAGAAACAAA CGAAGACGTT CTTCAAGATT GCTGCAACTG
TTTAGACCGA GCATTCATCG ATGCGGGTTA CGTTAGTTCC CGGAAATGCA
AGACTATTGG AGCCTTGGAG CTGAGAGTTG TCGCAAAAGG AACTTTCCGG
AAGATTCAAG AACATTTTCT CGGGCTTGGT TCATCGGCTG GACAGTTTAA
GATGCCAAGA TGTGTGAAGC CAAGTAATGC TAAGGTTCTC CAAATTCTGT
GTGAGAATGT GGTGAGTAGC TACTTCAGCA CAGCGTTTTG ACTCACTAAA
ATTGTGTGAA ATCAAAGAAA GTGGTTTTTA GTTGTTTATT TCCGTCGTTG
TTGTCTTTAT TTGTCAATAT AGTTTTCTTT ACGTTATTTA ATTGAGCATA
AACTTTTTTT ATCTCAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT2G46370.1 [+] show detail - Auxin-responsive GH3 family protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam GH3 auxin-responsive promoter 1.6e-178

See the detailed result >

AT2G46370.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.
Computational Description
JASMONATE RESISTANT 1 (JAR1); FUNCTIONS IN: catalytic activity, adenylyltransferase activity, ATP binding, jasmonate-amino synthetase activity; INVOLVED IN: in 13 processes; LOCATED IN: vacuole, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G03400.1); Has 1444 Blast hits to 1399 proteins in 231 species: Archae - 0; Bacteria - 474; Metazoa - 52; Fungi - 2; Plants - 663; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-11-A11 introduced

  • F02345 - Specific phenotypes were NOT observed.
  • F05838 - Specific phenotypes were NOT observed.
  • F13638 - seed::increased size / seed::increased length
  • F15148 - Specific phenotypes were NOT observed.
  • F18334 - Specific phenotypes were NOT observed.
  • F26833 - seed::increased length
  • F28532 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found