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RAFL07-11-E17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01462)

full reading [+] show sequence

Nucleotide sequence: RAFL07-11-E17 - full reading 
ACTTTCAAAG AAGAGAGAGA GAAAGAAAGA TGGAGAAGAA CATGAAGTTT 
CCAGTAGTAG ACTTGTCCAA GCTCAATGGG GAAGAGAGAG ACCAAACCAT 
GGCTCTAATC AATGAAGCTT GTGAGAATTG GGGCTTCTTT GAGATAGTGA 
ACCATGGATT ACCACATGAC TTAATGGACA AGATCGAGAA GATGACAAAG 
GACCATTACA AGACATGCCA AGAACAAAAG TTCAATGACA TGCTCAAGTC 
CAAAGGTTTG GATAATCTTG AGACAGAAGT CGAAGATGTC GATTGGGAAA 
GCACTTTCTA CGTTCGTCAC CTCCCTCAAT CCAATCTCAA TGACATTTCA 
GATGTGTCTG ATGAATACAG GACGGCCATG AAAGACTTTG GTAAGAGACT 
GGAGAATCTT GCTGAGGATT TGTTGGATCT ACTGTGTGAG AATCTAGGGT 
TAGAGAAAGG GTATTTGAAG AAAGTGTTTC ATGGAACAAA AGGCCCAACC 
TTTGGGACAA AGGTGAGCAA TTATCCACCA TGTCCTAAAC CAGAGATGAT 
CAAAGGTCTT AGGGCCCACA CTGATGCAGG AGGCATCATC TTGTTGTTTC 
AAGACGACAA GGTCAGTGGT CTCCAGCTTC TTAAAGATGG TGACTGGATT 
GATGTTCCTC CTCTCAACCA CTCTATTGTC ATCAATCTTG GTGACCAACT 
TGAGGTGATA ACCAACGGGA AGTATAAGAG TGTGCTGCAC CGTGTGGTGA 
CTCAACAAGA AGGAAACAGG ATGTCGGTTG CATCGTTTTA CAACCCGGGA 
AGCGATGCGG AGATCTCACC AGCTACTTCG CTTGTCGAGA AAGATTCCGA 
GTACCCGAGT TTCGTCTTTG ATGACTACAT GAAGCTTTAT GCAGGGGTCA 
AGTTTCAGCC CAAGGAGCCA CGGTTCGCAG CAATGAAGAA TGCTTCTGCA 
GTTACAGAAC TGAATCCTAC AGCAGCCGTA GAGACTTTCT AAAAATGGAT 
TTGAGATTCA AGTGAAGCAG AGAAAGAAAG ATGAGTTTGT GTTGTGTGTT 
ATGGCAATAA GTTAAAACTT GTATTAGTGT TGATTAATTG TTGGTCAATT 
GGTGTGTTTT AAAGTGTGGG GTGTTTATGT TTATGGAAGA TGATAATAAT 
TATAAAAATC TAAATTCTAG GAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT1G62380.1 [+] show detail - ACC oxidase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 1.3e-91
HMMPfam Oxoglutarate/iron-dependent oxygenase 3.3e-24
superfamily Clavaminate synthase-like 3.1e-88
HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 3.1e-211
HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 3.1e-211

See the detailed result >

AT1G62380.1

Model type
Protein coding
Short Description
ACC oxidase 2
Curator Summary
Encodes a protein similar to 1-aminocyclopropane-1-carboxylic oxidase (ACC oxidase). Expression of the AtACO2 transcripts is affected by ethylene.
Computational Description
ACC oxidase 2 (ACO2); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity, copper ion binding; INVOLVED IN: response to salt stress, detection of ethylene stimulus, ethylene biosynthetic process; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G12010.1); Has 8564 Blast hits to 8520 proteins in 992 species: Archae - 0; Bacteria - 1100; Metazoa - 104; Fungi - 1037; Plants - 4951; Viruses - 0; Other Eukaryotes - 1372 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-11-E17 introduced

  • F03143 - Specific phenotypes were NOT observed.
  • F04406 - Specific phenotypes were NOT observed.
  • F09515 - Specific phenotypes were NOT observed.
  • F13547 - Specific phenotypes were NOT observed.
  • F21631 - Specific phenotypes were NOT observed.
  • F23340 - seed::increased length
  • F24202 - Specific phenotypes were NOT observed.
  • F28646 - rosette leaf::dark green / rosette leaf::increased size / rosette leaf::epinastic / stem::present in fewer numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

13 mutant lines found