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  3. RAFL07-11-J07

RAFL07-11-J07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04139)

full reading [+] show sequence

Nucleotide sequence: RAFL07-11-J07 - full reading 
TCGCAGATTT TCCTCTCTAG TCTCCGTCTT CTATTACCAG ATCGAGCTTT 
GTTCTTCGAG CTTCTCATCT CTTTGTTCAA TCTCAAAGGT TCTTGCTGTT 
TTTCATTTAC AGGTTTTTGA GTATCAGCAA AGATGGGTGA CAATCTTATG 
GACAAAGTTA CCGCATTTGG TGAGCGCCTG AAGATCGGAG GTTCGGAAGT 
GAGCAACAAG ATCAGTGCTG GTGTGAGCTC AATGAGCTTT AAAGTGAAGG 
AACTTTTTCA AGGTCCAAAC CCAACTGATA AAATAGTCGA AGATGCTACT 
ACTGAGAATC TAGAGGAACC TGACTGGGAT ATGAATTTGG AAATTTGTGA 
TATGATAAAT CAAGAGACAA TTAATAGCGT TGAGTTGATC CGTGGTATAA 
AGAAGAGGAT TATGATGAAG CAGCCGAGGA TTCAGTACCT TGCCTTGGTT 
TTGCTCGAGA CGTGTGTTAA GAACTGTGAG AAGGCGTTTT CAGAGGTGGC 
AGCAGAGAGA GTCCTTGATG AAATGGTAAA GCTGATTGAT GATCCACAAA 
CAGTTGTTAA TAACCGAAAC AAAGCTTTGA TGCTGATTGA AGCTTGGGGA 
GAATCAACCA GTGAACTTCG CTACCTACCA GTTTTCGAAG AAACTTATAA 
GAGCTTAAAA GCAAGAGGTA TTCGCTTCCC TGGACGAGAC AACGAAAGCT 
TGGCACCTAT TTTCACTCCT GCTCGGTCAA CTCCAGCACC AGAACTGAAT 
GCTGATCTTC CTCAGCATGT GCATGAACCT GCACATATCC AGTATGATGT 
GCCTGTAAGA AGCTTTACTG CTGAGCAGAC AAAGGAAGCT TTTGATATAG 
CAAGAAACAG CATTGAACTT CTTTCCACGG TTCTGTCCTC CTCGCCTCAA 
CATGATGCTT TACAGGATGA CTTAACAACG ACACTTGTAC AACAATGTCG 
TCAATCTCAA ACCACTGTCC AAAGAATCAT TGAAACAGCA GGTGAAAACG 
AAGCCCTTCT TTTCGAAGCC TTGAATGTGA ACGACGAGCT AGTGAAAACG 
CTGTCTAAGT ATGAGGAGAT GAACAAACCC TCTGCACCGC TAACCTCACA 
TGAACCAGCC ATGATTCCCG TTGCTGAAGA GCCCGATGAC TCTCCAATTC 
ATGGAAGAGA AGAATCTCTG GTTAGAAAAT CTTCTGGTGT TCGAGGTGGA 
TTCCATGGAG GGGGTGGTAG TGGAGATGAC ATGATGGATG ATCTTGATGA 
GATGATATTC GGTAAGAAAA ACGGCTGTGA TTCTTCGACT AATCCAGATC 
ATGACCCAAA AAAGGAGCAG TCCTCATCCA AAAACGACGA TCTCATTCGA 
TTCTGAGACG GATACTTTCA GGCGACATAA TAAATCTTTT ATAATGTATT 
TGGTGTTTAA TTGGTAGTAT GAATGAACAG GTTCAATGTA AGTAATCTGT 
GTTTGGAGAT CTCTTTGACT TGTGTGATGG TTTATAAAGG AGATTTGTTA 
TGATGGCACA TGAGATTTGA AATACATTCT ATTCTAGTTT CTGCT

Gene models with high sequence identity

  1. AT5G16880.1 [+] show detail - Target of Myb protein 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan VHS 38.507
ProfileScan GAT 15.233
HMMPfam VHS 4.5e-26
HMMPfam GAT 1.4e-20
superfamily ENTH/VHS 2.3e-45
superfamily GAT-like domain 5.7e-28
Gene3D ENTH/VHS 3.6e-37
Gene3D no description 0.00062
HMMPIR Target of Myb protein 1 2e-214
HMMSmart VHS subgroup 3.4e-27
HMMPanther TARGET OF MYB1 RELATED (TOM1 - RELATED), PLAN 8.7e-77
HMMPanther VHS DOMAIN CONTAINING PROTEIN FAMILY 8.7e-77

See the detailed result >

AT5G16880.1

Model type
Protein coding
Short Description
Target of Myb protein 1
Computational Description
Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT1G06210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-11-J07 introduced

  • F03113 - Specific phenotypes were NOT observed.
  • F08304 - seed::increased length
  • F09214 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found