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  3. RAFL07-11-J07

RAFL07-11-J07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04139)

full reading [+] show sequence

Nucleotide sequence: RAFL07-11-J07 - full reading
TCGCAGATTT TCCTCTCTAG TCTCCGTCTT CTATTACCAG ATCGAGCTTT 
GTTCTTCGAG CTTCTCATCT CTTTGTTCAA TCTCAAAGGT TCTTGCTGTT
TTTCATTTAC AGGTTTTTGA GTATCAGCAA AGATGGGTGA CAATCTTATG
GACAAAGTTA CCGCATTTGG TGAGCGCCTG AAGATCGGAG GTTCGGAAGT
GAGCAACAAG ATCAGTGCTG GTGTGAGCTC AATGAGCTTT AAAGTGAAGG
AACTTTTTCA AGGTCCAAAC CCAACTGATA AAATAGTCGA AGATGCTACT
ACTGAGAATC TAGAGGAACC TGACTGGGAT ATGAATTTGG AAATTTGTGA
TATGATAAAT CAAGAGACAA TTAATAGCGT TGAGTTGATC CGTGGTATAA
AGAAGAGGAT TATGATGAAG CAGCCGAGGA TTCAGTACCT TGCCTTGGTT
TTGCTCGAGA CGTGTGTTAA GAACTGTGAG AAGGCGTTTT CAGAGGTGGC
AGCAGAGAGA GTCCTTGATG AAATGGTAAA GCTGATTGAT GATCCACAAA
CAGTTGTTAA TAACCGAAAC AAAGCTTTGA TGCTGATTGA AGCTTGGGGA
GAATCAACCA GTGAACTTCG CTACCTACCA GTTTTCGAAG AAACTTATAA
GAGCTTAAAA GCAAGAGGTA TTCGCTTCCC TGGACGAGAC AACGAAAGCT
TGGCACCTAT TTTCACTCCT GCTCGGTCAA CTCCAGCACC AGAACTGAAT
GCTGATCTTC CTCAGCATGT GCATGAACCT GCACATATCC AGTATGATGT
GCCTGTAAGA AGCTTTACTG CTGAGCAGAC AAAGGAAGCT TTTGATATAG
CAAGAAACAG CATTGAACTT CTTTCCACGG TTCTGTCCTC CTCGCCTCAA
CATGATGCTT TACAGGATGA CTTAACAACG ACACTTGTAC AACAATGTCG
TCAATCTCAA ACCACTGTCC AAAGAATCAT TGAAACAGCA GGTGAAAACG
AAGCCCTTCT TTTCGAAGCC TTGAATGTGA ACGACGAGCT AGTGAAAACG
CTGTCTAAGT ATGAGGAGAT GAACAAACCC TCTGCACCGC TAACCTCACA
TGAACCAGCC ATGATTCCCG TTGCTGAAGA GCCCGATGAC TCTCCAATTC
ATGGAAGAGA AGAATCTCTG GTTAGAAAAT CTTCTGGTGT TCGAGGTGGA
TTCCATGGAG GGGGTGGTAG TGGAGATGAC ATGATGGATG ATCTTGATGA
GATGATATTC GGTAAGAAAA ACGGCTGTGA TTCTTCGACT AATCCAGATC
ATGACCCAAA AAAGGAGCAG TCCTCATCCA AAAACGACGA TCTCATTCGA
TTCTGAGACG GATACTTTCA GGCGACATAA TAAATCTTTT ATAATGTATT
TGGTGTTTAA TTGGTAGTAT GAATGAACAG GTTCAATGTA AGTAATCTGT
GTTTGGAGAT CTCTTTGACT TGTGTGATGG TTTATAAAGG AGATTTGTTA
TGATGGCACA TGAGATTTGA AATACATTCT ATTCTAGTTT CTGCT

Gene models with high sequence identity

  1. AT5G16880.1 [+] show detail - Target of Myb protein 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan VHS 38.507
ProfileScan GAT 15.233
HMMPfam VHS 4.5e-26
HMMPfam GAT 1.4e-20
superfamily ENTH/VHS 2.3e-45
superfamily GAT-like domain 5.7e-28
Gene3D ENTH/VHS 3.6e-37
Gene3D no description 0.00062
HMMPIR Target of Myb protein 1 2e-214
HMMSmart VHS subgroup 3.4e-27
HMMPanther TARGET OF MYB1 RELATED (TOM1 - RELATED), PLAN 8.7e-77
HMMPanther VHS DOMAIN CONTAINING PROTEIN FAMILY 8.7e-77

See the detailed result >

AT5G16880.1

Model type
Protein coding
Short Description
Target of Myb protein 1
Computational Description
Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT1G06210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-11-J07 introduced

  • F03113 - Specific phenotypes were NOT observed.
  • F08304 - seed::increased length
  • F09214 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found