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  3. RAFL07-11-K15

RAFL07-11-K15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09517)

full reading [+] show sequence

Nucleotide sequence: RAFL07-11-K15 - full reading 
TTTTTTGCCC GGCGCATATC GACGGGATCT AGTAGATCCG GAACGATGGG 
GAAAAGAGGA AGGGCTTGTG TAGTGGTACT TGGAGATCTT GGTCGAAGTC 
CTCGGATGCA ATATCACGCT CTTTCTCTTG CTCGTCAGGC ATCATTTCAA 
GTGGACATTG TTGCATATGG AGGTTCTATA CCCCATGAAG CTGTTCTAAA 
TCACCCATCA ATCCACATCC ATACCATGGC GCAGCCTCGA TTCATTCAGT 
ACTTTCCAAA GATACTTTAT CCTGTAACTC TCTTGCTCAA GGCATTTATT 
CAGTTTACAA TGCTTCTCTG GTTTCTTTTC GTTAAAGTAC CAGCGCCTGA 
CATTTTCTTG GTCCAGAATC CTCCTTCCGT CCCAACTCTA ATTGCTGTTA 
AGTGGGCGAG TTCATGGAGA CGTGCAGCGT TTGTTGTAGA TTGGCATAAT 
TTTGGATATA CGTTGTTGGC ATTGTCTTTA GGAAGAAACA ATTTGCTTGT 
ATCCTTATAC CGCTGGTCTG AGAATCATTA TGGAAAGATG GCAACAGGTT 
CGCTATGTGT CACAAAAGCA ATGCAACATG AACTGGATCA GAATTGGGGT 
GTGAGAGCCA AAGTGTTATA TGATCAGCCT CCTGAGTTTT TCCGTCCCGC 
TTTGCTTGAA GAAAGGCATG AGTTGTTTTG CCGAGTGAGG AAGGATCTTT 
GCCATCCAAT TGGTGTCTAT GATTTCATTA GTAGAGAGTT GGAAAACCAA 
GAGCTTAATG AAACCCTTTT TACTACCAAA TTTAATGCTG ACATCTCGCT 
GAAGCAAAAC AGACCAGCTC TTGTTGTGAG TAGTACAAGC TGGACCCCTG 
ATGAAAATTT TGGTATCCTA CTGGAAGCTG CAGTGATGTA TGATCGGCGT 
GTGGCTGCAA GATCAAAAGG AAGTGAAACA GCTGAAATTT CAGAAGAGCA 
ACACCATTAT CCCAATTTGT TGTTCATCAT TACAGGTAAA GGACCTGAAA 
AGGAGATGTA CGAGGAGAAA ATCAAACGAT TAAACCTTAG ACATGTGGCA 
TTCCGTACAA TGTGGCTCGC AGCTGAAGAT TACCCATTGC TTTTAGGTTC 
TGCAGATCTC GGTGTCTGCT TACACACTTC CTCGTCGGGT TTAGACCTTC 
CCATGAAGGT TGTTGATATG TTTGGATGTG GCCTCCCAGT TTGCTCGGTT 
TCCTACTCAT GCATTCAAGA ACTCGTTAAA GATGGGAAGA ACGGACTTTT 
GTTTTCATCT TCATCAGAAT TAGCAGATCA ATTATTGATT CTCTTCAAGG 
GTTTTCCAGG GAACTGTGAT GCACTAATGT CGCTTAAAGC GGGTGCAATG 
GAGACTGGTT CTTCGGGTCG ATGGGCTACA GAGTGGGAAG ATTGTGCAAA 
ACCTTTAATC ACTCAGGTCG TGTCTCAAAT TGCAGATTCA TGAAAGAGAA 
GACTCAAAAT CGATGGGCTT GAGAGTTTCT CACACAACTG CTTTTGTAGA 
TCCAAATTTT TATACAAAAT CCTATAGATT ACAAGATTGT CTCGAAAATA 
TTGACAGAAT CTGAATTCAA AATGGTTTCG CATGAGTCTG TGTATGAATG 
AGTAAATGAT ATCAAAATCT TTCTTAAC

Gene models with high sequence identity

  1. AT1G16570.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 4.3e-16
HMMPfam Glycosyl transferase, group 1 1.1e-10
HMMPanther BETA1,4 MANNOSYLTRANSFERASE 2.6e-208

See the detailed result >

AT1G16570.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); Has 834 Blast hits to 816 proteins in 377 species: Archae - 30; Bacteria - 354; Metazoa - 141; Fungi - 141; Plants - 50; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-11-K15 introduced

  • F04519 - Specific phenotypes were NOT observed.
  • F06509 - Specific phenotypes were NOT observed.
  • F11534 - seed::increased size / seed::increased length
  • F16240 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found