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  3. RAFL07-11-O11

RAFL07-11-O11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04158)

full reading [+] show sequence

Nucleotide sequence: RAFL07-11-O11 - full reading 
ATCACGAGAA CCACACAAAT ACGCGGCAAA GAGAGAGAAA GATAGAGAGA 
GAGAGAGAGA GAGAGAGAGA AAGCGGTGGA GTCGTGATAA GGGAGAAGCT 
CTGGATACAG TCTCTTCCCG TCGTCGGAGA CGGAGTTTAT GCCTATTGGC 
TCCTGAGGTT AGATTAAGCT TCGTATTTAG TGGATTTTCT TCTTTTGAGA 
TATGGAACAA GATTACATCT GCTCAGGGTG CTACCAGTAT CGAGTTTTTT 
CATTGCAAGA AGCACTCGAT TGGCGGTTTC TTGTGCACTC AGATTTCCTT 
ATCGGCTCTT TCGTGAACTG CACCTAGTGG TCAGACCTTC TGCGATCTTT 
ACGGAAGGTG TGATGCAAAT TTCTGATTCA GGGCTGATGT TTGCAAGTTA 
TCCTACCTTC ACACAGTCCT AGAGTGTCAT CTAAATCTGT TCCCTGCACT 
CAAAAACTAG TTGGTCCTTC TTCCATATCC TGTTCTTATG AGAGCTTGTT 
GAAGAAGGAT GAATCAGTTT TTTTTCAAGT TATGACTTTT CTTAGCTGTG 
TCTTTTCCTC GAGTCTCTGA ACCCCTTGAG TGAAATGTTG TGAGCATAAG 
TTTCGTCCAG CTACCCAGAA CATTACTTTT TGTTAGTGCG TCTTCCAATT 
CTCAGTATGT TTTGTCTTTT TCTCTTAGCG TCTTTCTTTT GCCTTGTTGG 
TCAACCCATT GATGTTCAAA CTTCAAAGTA AATAAGGGTC AGTCTACCCA 
GCGGGAGAAT CATTGATCTT GCTGCCATAC GAACAACTGG AAGATTAAAG 
TGATAGACAT ATTTCAGAAG TTCTTTACAG AGAAATACTT AAGGGGATAC 
TTTGCTTCAC CTAGAGGCGA TGGAGAGGTA TACATTACTC AAAGAAGTTG 
GTGACGGAAC ATTTGGGAAT GTTTGGCGAG CTGTCAATAA ACAGACGAAT 
GAAGTTGTGG CAATTAAAAG AATGAAGAAG AAGTATTTCT CTTGGGAAGA 
GTGTGTGAAT CTAAGAGAAG TGAAGTCACT TAGCAGAATG AATCATCCAA 
ACATTGTGAA GCTGAAGGAA GTCATCCGGG AAAATGATAT CCTATACTTT 
GTGTTTGAGT ACATGGAGTG CAATCTTTAC CAGCTTATGA AGGATCGCCC 
TAAGCATTTT GCAGAATCTG ATATCCGAAA TTGGTGCTTC CAGGTCTTCC 
AAGGCCTTTC TTATATGCAT CAGCGTGGAT ACTTCCACCG TGATCTTAAG 
CCAGAAAATC TATTGGTCTC GAAAGATGTC ATTAAGATTG CTGATCTTGG 
CCTGGCCCGG GAGATCGACT CGAGTCCACC TTATACAGAA TATGTCTCTA 
CACGCTGGTA TAGGGCACCT GAAGTACTGC TACAATCATA TGTATACACG 
TCAAAAGTTG ATATGTGGGC GATGGGTGCT ATTATGGCGG AGCTGTTGTC 
TCTTCGCCCT CTCTTTCCTG GAGCTAGTGA AGCGGATGAG ATATACAAAA 
TCTGCAGTGT CATAGGCAGC CCAACCGAAG AGACCTGGTT GGAGGGGCTG 
AACCTTGCCA GCGTTATCAA TTACCAATTC CCTCAGTTTC CCGGTGTACA 
TTTATCAAGT GTGATGCCAT ATGCTAGTGC GGATGCGGTT AACCTTATTG 
AGCGCCTTTG CTCGTGGGAT CCCTGCAATA GACCGACTAC TGCAGAGGCT 
CTACAGCATC CGTTCTTCCA AAGTTGCTAC TATATTCCCC CATCTCTCCG 
TCCCAAGCTG TCTGAACCAA GAGGGTCTCT CGAGCAGCAG CAATCCGTGA 
AGCGTTTACC AGCGGCTCCG ACTTATAATG CTAATAAGCC GTTGAACACC 
TACGTTACTC CAAAGACGAA TGCTCCTTTT AGCAATGGTG TCAACAGTTA 
TGTTACTCCA AAGACAAATG CTCCATTTAG CAATGGTGTC AACAGTTATG 
TTACTGCAAA GACGAATGCT CCTTTTAGCA ATGGTGTCAA CAATTATGTT 
GCTCCAAAGA TGAATGCTCC TTTTGACAAT GGTGCGACCC AGCAGAAGGT 
GGATACGACT AATAATAATA ACCAGAACAC GGCGTGGAAC AACAAACCTG 
TGAGAAGTTA TAACGTTAAA GATTCAAAGT ATAGACCACC GGGAAGGAAG 
AGTCCACTTG CAGCATCTAT GGAAAAGAAC TGGGTCTTTT CCCGTGGAGC 
ATCAGAGACT GCAAATAAAC TGGCAAATGA AACAATTGGA GGAAGATGGA 
CTCAAAGTCA AAGGCAACAA CAACCGGCGA TGAAGGCAGG GTGGGTGGGA 
GAAAGTGGTG ACATGTTCCT CAGACCTACA CAGCCTTCCA ATCCCTACTC 
TAGGAAAATC GCCGGTTAAG CTGAAAGATT CTGTTATGGC GCATCTAAGT 
TACGAGCCCT CATCAACACC TTCACCCGTC GTTGTGCTTT TGATTATCAT 
CATCACCTAT CTGAGAGTCC AAGTTATTTG AAGACAACTT ATGTTGATTT 
TTTCTCTTTT GTGTTTCGTT CTTTTAAACC TCTCTTGTTT GTTCGGTAGT 
ACTTCCCGTC TTCATGACGA TTATGTATGG AGTGTTTCTT TTTACAGTTC 
GCAATAAAAG CTCTCGACAT TGCAC

Gene models with high sequence identity

  1. AT5G45428.1 [+] show detail - conserved peptide upstream open reading frame 24
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
superfamily Protein kinase-like domain 2.6e-89
HMMSmart Serine/threonine-protein kinase domain 3.6e-100
HMMSmart Tyrosine-protein kinase, catalytic domain 1e-14
Gene3D no description 4e-65
ProfileScan Protein kinase, catalytic domain 47.863
HMMPanther MAK/IME2(YEAST)-RELATED 8.7e-153
HMMPanther CDC2, MAP KINASE-RELATED 8.7e-153
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
HMMPfam Serine/threonine-protein kinase-like domain 1e-71

See the detailed result >

AT5G45428.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 24
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF24 represents a conserved upstream opening reading frame relative to major ORF AT5G45430.1
Computational Description
conserved peptide upstream open reading frame 24 (CPuORF24); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 25 (TAIR:AT4G19112.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-11-O11 introduced

  • F15841 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found