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  3. RAFL07-12-A13

RAFL07-12-A13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda04165)

full reading [+] show sequence

Nucleotide sequence: RAFL07-12-A13 - full reading 
GGTCGTGTTC TTCTTATAAG GGTTTTTGTT TATAATTTGG TAATCGAAAA 
AGAGAGATTT GATAAAATCC TTTGTGTTGA AGGAAAAAAA AATCATATAG 
GTAACGTTTG ATACAAGTAA AAAAAAAAAA TTTCCATCAC TTTCTTGGGT 
AAAAAAAACA TGGGTTAGAG GAAAAACTGG GGAAAAGATT TTAGATTAAG 
TGCGTAAAGA ATTCTGATTC CTTCGTCTCC GATCTCTCAT TTTTCTGGAG 
AAATTGTCAA AAATTTCAGA TATCTATATT GTCTTGGAAC TGAAGATTCA 
TCGAAAGATT GGTGAGTTTT ATTCGCTGCT TATCGCTTGT GGCAATCACA 
TCATCTGTGT TATGCATCCA AGTAATGGTG TCACATAAAG TCTTAGAATT 
TGGAGATGAT GGTTACAAAT TACCTGCTCA AGCTCGAGCT CCGAGATCAC 
TCCGGAAGAA GCGCATTTAC GAAAAGAAGA TACCAGGAGA TGATAAGATG 
TGCGCGATTG ACTTATTGGC CACCGTAGCT GGAAGCTTGC TTCTCGAGAG 
CAAAAGTCCG GTAAACGCGT GTCTAGTTGT ACAAAATACT GTAAAGAATG 
AATACCCGGC TGATGAAAAC CCCGTAAAGG CGGTTCCTTA TTCGGAATCC 
CCGAGCCTAT TTGACAATGG CAAGTGTGGA TTTAGCTCTG TGATAACAAA 
TCCTAATCAC TTGTTGGTAG GTGACAAAGT AGGAAAGGAG GTGGAGGGTT 
TTAGTAGTTT GGGTGTGAGT GGTGATGTAA AGCCTGATGT TGTAGCTAGT 
ATAGGTAGTA ACAGTAGTAC CGAGGTGGGA GCATGTGGGA ACGGTAGTCC 
CAACGAGTCT CGGGATGATG TAAATTTGTT TAGTAGAAAT GATGATGATG 
AAAACTTTTC GGGTTACATT CGAACTCGTA TGACTAGGCC TGTGCCTCGT 
ATTGGAGACA GAAGAATTAG GAAGATATTG GCATCTAGAC ATTGGAAAGG 
AGGTTCGAAG AACAACACAG ATGCAAAGCC ATGGTATTGC TCAAAGAGGA 
GTTATTACTT GCACCATCAT CAGAGGAGTT ATCCCATCAA GAAAAGGAAA 
TACTTTGACA GTGTTTACGA CTCGAACTCT GATGATTACC GTTTGCAAGG 
AAAGACTCAT AAAGGAAGCA GAACAATATC TTCCATGAAA AGTCGAAATG 
CGTCCTTTGT GTCAAGGGAT CATCATGTGA AGCTGCGGAT CAAGTCTTTT 
AGGGTGCCTG AGCTTTTCGT AGAGATTCCA GAAACTGCTA CTGTTGGCTC 
CTTGAAGGTG TAATAACAAA ACCTAGTTGT GCTGAAAATC CTGATCAAGA 
AGAACTTATA TTTGTATTTT TGTAATGTCG GGGTTGTCAG CGGATGGTGA 
TGGAAGCAGT GACCACCATA CTGGGTGATG GACTTCGAGT CGGGCTGATG 
GTTCAAGGAA AGAAAGTCCG AGATGATGGC AAAACTCTTC TTCAGACTGG 
GATCTCTGAG GAGAACAACC ACTTGGATTC TCTTGGTTTC AGCCTTGAAC 
CTAGCTTAGA GACCACCCCT CAACCACTGT TATCCAGGTT CACTCTTCTC 
TTCACTCTCA GAGATGCCAC ATCGATAAAA AATCAATCTT TTGCGGCTTA 
AGGGCCTTGT TTTCTCTCTG CCAGTTATCT GTCAGATCAT GCCTGTGATG 
ATGTGACGTT ATGCCACGAC AATGCGTTGG ATTCTAGTCA TGAGCCAGAA 
CCATCCCCAG CTGACTCATT TGGGAAACTA GGCACAAGTG ATCATTCTAG 
AGCTTTGATT CCTGTTGCCT CAGCAGCAAT GCTGGCTCCT CGGCCTCCTA 
ACCGTAAGTT TAAAAGGACT GAGCAGCAGC TAGCTGCACA ACGCAGAATT 
CGTCGACCTT TCTCAGTTAC TGAAGTAGAA GCACTGGTCC AAGCCGTTGA 
GAAACTCGGA ACCGGAAGGT ACAAAACAAA GAAATAGCAC TTTCTCTTCT 
TCATGTTGCT GACAAAATGT GTTTGAAAAC TACAGGTGGA GAGATGTGAA 
GGTTCGTGCT TTCGAGGACG CAGACCATCG TACCTATGTT GATCTCAAGG 
TTAGTTAGTT TTTTAACTAA CTCTTAACCT TAATATATAC AGTTTGGTAT 
TGAGTCTTTG CCTTTGTAGG ATAAGTGGAA GACGCTGGTC CACACGGCAA 
GGATATCTCC ACAACAGCGG AGAGGAGAGC CGGTGCCACA GGAACTTCTG 
GACCGTGTTT TGAAGGCACA CGCTTACTGG TCACAACACC TAATGCATCA 
ACTGCAGACT GAGCCACCAT CCACTCAGGT AGAGGCTCTC TAATCTGAAC 
AGGTTCTTGG TCTAAAGAAC CTTTGTGTAT TATTATGATG ATCCATATTG 
TAAGATTCTG ACATAGTTGA AGATCTGGTC TCAGTTCTTC TTTGTTTTTT 
TTTTTTCTTT CTTTCAAATG TAAAGTTTTA TAATTGGAAA TAAGGTTGGG 
TTTTTTC

Gene models with high sequence identity

  1. AT3G46590.2 [+] show detail - TRF-like 1
    E-value: 0; Score: 99.71

 

InterPro Scan Digest

See the detailed result >

AT3G46590.2

Model type
Protein coding
Short Description
TRF-like 1
Curator Summary
Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.
Computational Description
TRF-like 1 (TRFL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin supergroup (InterPro:IPR019955), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: telomeric repeat binding protein 1 (TAIR:AT5G59430.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-12-A13 introduced

  • F03605 - Specific phenotypes were NOT observed.
  • F10816 - seed::increased size / seed::increased length
  • F18317 - Specific phenotypes were NOT observed.
  • F22902 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found