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  3. RAFL07-12-F08

RAFL07-12-F08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09525)

full reading [+] show sequence

Nucleotide sequence: RAFL07-12-F08 - full reading 
AAAACCTTTT GCTCTTCCTT TTGATTAATT TAGTGTTTGA CAATCTCCTC 
CTCCTTCTCC TTCTTCTTCA AAGTTTTGTC GCAGTATCTA TTGTTCTTAC 
AGAGAGAAAG GAAAGCTTTA GTCTTTTACC AGTTTGATCC AATTCTGGGT 
TTCACTGAAA AAAAGTTGGG AGTTTGATTC TTCTAACTGT AGAAGAAACA 
GAGTCAACAG AAGAAAACTA AAAAAGTTGA GATTTTTCTC TCACGCGCTC 
AAGAACTTGA GTATGTCTTC TTCTGTAGCA GTGTTATGGG TTGCTACTTC 
TTCTCTAAAT CCAGACCCAA TGAACAATTG TGGGTTGGTA AGGGTTCTAG 
AATCTTCTAG ACTGTTCTCT CCTTGTCAGA ATCAGAGACT AAACAAAGGT 
AAGAAGAAGC AGATACCAAC TTGGAGTTCT TCTTTTGTAA GGAACCGAAG 
TAGAAGAATT GGTGTTGTGT CTTCAAGCTT AGTAGCAAGT CCTTCTGGAG 
AGATAGCTCT TTCATCTGAA GAGAAGGTTT ACAATGTTGT GTTGAAACAA 
GCTGCTTTGG TGAACAAACA GCTAAGGTCT TCTTCTTATG ACCTTGATGT 
GAAGAAACCA CAAGATGTTG TTCTTCCTGG GAGTTTGAGT TTGTTGGGTG 
AAGCTTATGA TCGATGCGGT GAAGTTTGCG CTGAATATGC TAAGACGTTT 
TATCTTGGAA CTTTGCTTAT GACACCCGAA AGGCGAAAGG CGATTTGGGC 
AATCTACGTT TGGTGTAGAA GAACTGATGA ACTTGTGGAT GGGCCAAATG 
CTTCACATAT AACTCCCATG GCTTTAGATA GATGGGAAGC AAGGTTAGAA 
GATCTTTTCC GTGGTCGTCC TTTCGATATG CTTGATGCTG CTCTCGCTGA 
TACAGTTGCT AGATACCCGG TCGATATTCA GCCATTTCGA GACATGATCG 
AAGGAATGAG AATGGACTTG AAGAAATCGA GATACCAGAA CTTCGATGAT 
CTATACCTTT ACTGCTACTA CGTCGCTGGA ACCGTCGGAT TGATGAGCGT 
TCCGGTTATG GGAATCGATC CTAAGTCGAA AGCAACAACC GAAAGTGTTT 
ACAACGCTGC CTTGGCCCTT GGTATAGCCA ATCAGCTTAC TAACATACTC 
AGAGACGTAG GCGAAGATGC GAGAAGAGGA AGGGTTTATC TGCCTCAGGA 
TGAATTGGCT CAGGCTGGTC TTTCAGATGA AGACATATTC GCCGGAAAAG 
TAACTGATAA ATGGAGAAAC TTCATGAAAA TGCAGCTTAA ACGAGCAAGA 
ATGTTCTTCG ACGAAGCTGA GAAAGGCGTC ACCGAGCTCA GTGCCGCTAG 
CAGATGGCCT GTATGGGCTT CATTGCTATT GTACAGGAGA ATACTGGACG 
AGATTGAAGC GAATGATTAC AACAATTTTA CTAAGAGAGC TTATGTGGGG 
AAAGTCAAGA AAATTGCAGC TTTGCCATTG GCTTATGCTA AATCAGTACT 
AAAGACTTCA AGTTCAAGAC TATCGATATG AGAGCGAGAG GAAAGTGGAA 
CAAAAACAAC CTAAGAGCGC TTTTTGTGAT TAAGAAAAAA CTTAGGCTCG 
AATTTATTAT GTTAACTAAT ATATACATAT TAATGGGGAA GCAAATTCTT 
ATAATGTTAC ATTATCTTTC TGAATGTAAA AAAGTATTTT TTTTTTTAAT 
TTTATTTTAG TTATAGTTCT CTTGGCCTAA TGAGGGGATA TACAATTTTT 
GGTTGAT

Gene models with high sequence identity

  1. AT5G17230.1 [+] show detail - PHYTOENE SYNTHASE
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Squalene/phytoene synthase 1.3e-78
Gene3D Terpenoid synthase 6.7e-82
superfamily Terpenoid synthase 7.1e-97
PatternScan Squalene/phytoene synthase, conserved site 0
PatternScan Squalene/phytoene synthase, conserved site 0

See the detailed result >

AT5G17230.1

Model type
Protein coding
Short Description
PHYTOENE SYNTHASE
Curator Summary
Encodes phytoene synthase.
Computational Description
PHYTOENE SYNTHASE (PSY); FUNCTIONS IN: phytoene synthase activity, geranylgeranyl-diphosphate geranylgeranyltransferase activity; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene/phytoene synthase, conserved site (InterPro:IPR019845), Terpenoid synthase (InterPro:IPR008949), Squalene/phytoene synthase (InterPro:IPR002060); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL07-12-F08 introduced

  • F11042 - fruit::abnormal
  • F15122 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found